Factsheet for AT1G65180.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G69150.1	Thale cress	cytosol	48.7	61.51
AT3G43890.1	Thale cress	cytosol	62.17	61.42
AT4G01925.1	Thale cress	cytosol	23.58	55.0
AT4G01760.1	Thale cress	cytosol	53.14	52.02
AT4G01910.1	Thale cress	cytosol	50.54	50.69
AT4G11540.1	Thale cress	cytosol	40.74	50.67
AT4G01930.1	Thale cress	cytosol	50.23	50.31
AT4G01920.1	Thale cress	cytosol	50.23	49.85
AT4G11550.1	Thale cress	cytosol	50.54	49.4
AT4G02190.1	Thale cress	cytosol	49.0	48.56
AT4G01740.1	Thale cress	cytosol	47.01	47.09
AT1G58037.1	Thale cress	cytosol	24.5	46.65
AT5G45730.1	Thale cress	nucleus	36.29	42.32
AT4G16015.1	Thale cress	cytosol	34.3	41.87
AT2G43220.1	Thale cress	peroxisome	34.46	41.82
AT5G22355.1	Thale cress	cytosol	41.96	41.27
AT5G44770.1	Thale cress	cytosol, nucleus, peroxisome	34.15	41.22
AT4G14980.1	Thale cress	cytosol	34.3	41.1
AT3G27510.1	Thale cress	cytosol	27.57	40.91
AT3G06990.1	Thale cress	nucleus	33.38	40.45
AT2G04680.1	Thale cress	cytosol	40.12	39.88
AT4G11390.2	Thale cress	cytosol	33.23	39.74
AT3G48400.1	Thale cress	cytosol	37.52	39.58
AT2G19660.2	Thale cress	nucleus	41.65	39.42
AT3G07000.1	Thale cress	cytosol	34.61	39.37
AT5G59940.1	Thale cress	cytosol	39.2	39.32
AT5G54050.1	Thale cress	nucleus	34.92	39.31
AT3G27473.1	Thale cress	cytosol	39.82	39.27
AT4G01350.1	Thale cress	cytosol	39.2	39.26
AT5G40320.1	Thale cress	nucleus	35.68	39.23
AT5G59930.1	Thale cress	cytosol, nucleus, plasma membrane	39.2	39.02
AT5G37620.1	Thale cress	cytosol	38.9	38.96
AT3G46800.1	Thale cress	cytosol	40.58	38.86
AT3G27480.1	Thale cress	cytosol, nucleus, peroxisome	35.22	38.08
AT2G04500.1	Thale cress	cytosol	28.79	37.98
AT5G54030.1	Thale cress	cytosol	24.35	37.95
AT3G46810.1	Thale cress	cytosol	39.82	37.9
AT3G28650.1	Thale cress	cytosol	38.44	37.74
AT4G13992.1	Thale cress	mitochondrion	37.06	37.69
AT3G27500.1	Thale cress	cytosol	39.66	37.43
AT5G54020.2	Thale cress	nucleus	33.54	37.24
AT5G59920.1	Thale cress	cytosol	40.43	37.18
AT5G54040.1	Thale cress	cytosol	33.84	37.08
AT5G42840.1	Thale cress	cytosol	37.98	36.96
AT2G19650.1	Thale cress	cytosol	38.44	36.8
AT3G45530.1	Thale cress	cytosol	38.13	35.98
AT5G29624.1	Thale cress	cytosol	26.49	35.45
AT3G27490.1	Thale cress	cytosol	36.75	35.19
AT3G45840.1	Thale cress	mitochondrion, nucleus, peroxisome, vacuole	31.09	34.35
AT4G02180.1	Thale cress	cytosol	49.92	32.96
KRG95394	Soybean	nucleus	21.44	24.69
KRH67075	Soybean	nucleus	21.44	24.56

Protein Annotations

Gene3D:3.30.60.20	MapMan:35.2	EntrezGene:842825	ProteinID:AAD26872.1	ProteinID:AEE34341.1	ArrayExpress:AT1G65180
EnsemblPlantsGene:AT1G65180	RefSeq:AT1G65180	TAIR:AT1G65180	RefSeq:AT1G65180-TAIR-G	EnsemblPlants:AT1G65180.1	TAIR:AT1G65180.1
EMBL:AY064071	EMBL:AY133790	Unigene:At.27078	InterPro:DC1	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009506	GO:GO:0009987	GO:GO:0035556	GO:GO:0046872	InterPro:IPR013087
RefSeq:NP_176697.1	PFAM:PF03107	PO:PO:0000037	PO:PO:0000256	PO:PO:0000262	PO:PO:0007616
PO:PO:0009005	PO:PO:0009052	ScanProsite:PS00028	UniProt:Q9S9J8	SMART:SM00249	SUPFAM:SSF57889
UniParc:UPI00000AACE7	InterPro:Znf_C2H2_type	InterPro:Znf_PHD	SEG:seg	:	:

Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9S9J8]

Coordinates

chr1:-:24211678..24213946

Molecular Weight (calculated)

75342.9 Da

IEP (calculated)

7.449

GRAVY (calculated)

-0.446

Length

653 amino acids

Sequence
(BLAST)

001: MEPEMVRLPI HEHWLTPARD NRWGKCCGLQ FKTISDGYNC RKCRYFFHKS CSNCPKEINH PSHKCDKNLS LITNFASWSV RCRTCKETIQ PYIQNYECQR
101: CEFNIHLDCF KYPPPKVIDF PQNHDHKLKL EMVRSSFTCF TCGKGGSGYP YKCHECDLAF HVDCEKYGAE VNHPSHSLHT LKLITGKPPA YTDGNCSLCG
201: KKIFDEMFYH CSACNFTLDL RCVSLPPPLN LHDQNTHNHE LTLMPKLISF TCTTCGLHGD RSPYVCLQCN FTSHNNCSGF PWVININRHD HRVSRTSLLG
301: IIDSVCGVCR KKMDWSCGGY SCKRCSESTF HTKCATREDV WDGIEMKDEP EEDEPMEPFE VISEGIIRHF SHIEHNLRLD KSGTFVEERS CKACAYPIYH
401: DPFYSCMSCD FLLHENCAKH PTRKRHVLSN KPYILHASQR NYSKCKACGV FFNCFIYGTF PFGLDVRCAS FSGSLVHPSH QHPLFYTSPK GVCSACNKET
501: SHVLRCVEDK CGYALDFKCA LLPHEVKHRV DDHFLSLCYG ERDASGKYWC DICEKETDPT KWFYTCKDCG VTLHTNCVLG DFRGLEPETN IVLDDDRMQM
601: TLYETVRNNS MSRPVCYKCK YHCIFPIILK VTDEDKYFCS ISCCDIKTLP FYN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.