Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G16015.1 | Thale cress | cytosol | 58.1 | 69.72 |
| CDY60784 | Canola | cytosol | 33.8 | 64.58 |
| AT4G01925.1 | Thale cress | cytosol | 18.38 | 42.14 |
| AT4G11540.1 | Thale cress | cytosol | 32.71 | 40.0 |
| AT2G43220.1 | Thale cress | peroxisome | 33.33 | 39.78 |
| AT5G22355.1 | Thale cress | cytosol | 40.34 | 39.01 |
| AT4G11550.1 | Thale cress | cytosol | 40.5 | 38.92 |
| AT1G58037.1 | Thale cress | cytosol | 20.56 | 38.48 |
| AT4G01930.1 | Thale cress | cytosol | 38.78 | 38.19 |
| AT4G01910.1 | Thale cress | cytosol | 38.63 | 38.1 |
| AT4G02190.1 | Thale cress | cytosol | 39.1 | 38.09 |
| AT5G45730.1 | Thale cress | nucleus | 33.18 | 38.04 |
| AT2G04680.1 | Thale cress | cytosol | 38.78 | 37.9 |
| AT5G40320.1 | Thale cress | nucleus | 34.89 | 37.71 |
| AT3G06990.1 | Thale cress | nucleus | 31.46 | 37.48 |
| AT5G37620.1 | Thale cress | cytosol | 38.01 | 37.42 |
| AT4G01740.1 | Thale cress | cytosol | 38.01 | 37.42 |
| AT3G48400.1 | Thale cress | cytosol | 35.83 | 37.16 |
| AT1G65180.1 | Thale cress | nucleus | 37.69 | 37.06 |
| AT3G07000.1 | Thale cress | cytosol | 33.02 | 36.93 |
| AT4G01920.1 | Thale cress | cytosol | 37.85 | 36.93 |
| AT4G01760.1 | Thale cress | cytosol | 38.32 | 36.88 |
| AT3G46800.1 | Thale cress | cytosol | 39.1 | 36.8 |
| AT2G19650.1 | Thale cress | cytosol | 38.94 | 36.66 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 30.69 | 36.41 |
| AT4G01350.1 | Thale cress | cytosol | 36.92 | 36.35 |
| AT2G19660.2 | Thale cress | nucleus | 38.94 | 36.23 |
| AT1G69150.1 | Thale cress | cytosol | 29.13 | 36.17 |
| AT3G46810.1 | Thale cress | cytosol | 38.47 | 36.01 |
| AT3G43890.1 | Thale cress | cytosol | 36.6 | 35.55 |
| AT5G54030.1 | Thale cress | cytosol | 22.9 | 35.08 |
| AT4G14980.1 | Thale cress | cytosol | 29.75 | 35.05 |
| AT3G28650.1 | Thale cress | cytosol | 36.14 | 34.89 |
| AT3G27510.1 | Thale cress | cytosol | 23.83 | 34.77 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 35.51 | 34.76 |
| AT2G04500.1 | Thale cress | cytosol | 26.79 | 34.75 |
| AT5G54020.2 | Thale cress | nucleus | 31.78 | 34.69 |
| AT5G54050.1 | Thale cress | nucleus | 31.31 | 34.66 |
| AT5G59940.1 | Thale cress | cytosol | 34.89 | 34.41 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 32.24 | 34.27 |
| AT5G54040.1 | Thale cress | cytosol | 31.15 | 33.56 |
| AT3G27473.1 | Thale cress | cytosol | 34.58 | 33.53 |
| AT5G29624.1 | Thale cress | cytosol | 25.39 | 33.4 |
| AT5G59920.1 | Thale cress | cytosol | 36.6 | 33.1 |
| AT4G11390.2 | Thale cress | cytosol | 28.04 | 32.97 |
| AT3G27490.1 | Thale cress | cytosol | 34.89 | 32.84 |
| AT5G42840.1 | Thale cress | cytosol | 34.11 | 32.64 |
| AT3G27500.1 | Thale cress | cytosol | 35.05 | 32.51 |
| AT3G45530.1 | Thale cress | cytosol | 35.05 | 32.51 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 29.28 | 31.81 |
| AT4G02180.1 | Thale cress | cytosol | 39.41 | 25.58 |
| KRG95394 | Soybean | nucleus | 22.59 | 25.57 |
| KRH67075 | Soybean | nucleus | 22.59 | 25.44 |
Protein Annotations
| MapMan:35.2 | EntrezGene:6240793 | ProteinID:AEE83358.1 | ArrayExpress:AT4G13992 | EnsemblPlantsGene:AT4G13992 | RefSeq:AT4G13992 |
| TAIR:AT4G13992 | RefSeq:AT4G13992-TAIR-G | EnsemblPlants:AT4G13992.1 | TAIR:AT4G13992.1 | Unigene:At.73504 | UniProt:B3H723 |
| InterPro:DC1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 | GO:GO:0046872 |
| InterPro:IPR002219 | RefSeq:NP_001118977.1 | InterPro:PE/DAG-bd | PFAM:PF03107 | SMART:SM00109 | SUPFAM:SSF57889 |
| UniParc:UPI0001739389 | : | : | : | : | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:B3H723]
Coordinates
chr4:+:8087310..8089347
Molecular Weight (calculated)
73923.6 Da
IEP (calculated)
7.313
GRAVY (calculated)
-0.288
Length
642 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTYDKLRRY YLLYQTRGLK CDGCNLGRDY YSIGHRCFRS GLFFHNECAE SSVEIHNLYH PQHSLHIKVL KQNEDVHGEC KLCRGNLAKI YYQCSTCDFA
101: IDLICARKKV VATIEVPKTH DHPLSLIPKM ITFTCHLCGL LDDRFPYACN LCDITFHKDC AESTPEINYS CHPQHLLKRL THVPSYTDGK CCLCGSKLHN
201: LFYHCSICNF SVDVNCEKNP PSFTLFHPKA HEHKLTLMPQ RSFVCSACGM DDDPNPYVCP QCNFMIHRSC IDIPRVIKIY RHDHHICYNN FLDAGDWKCG
301: ICHKKINWTC GAYSCSECPD LVMHLRCATR FGIWNGIELE GISKNTLKVK SYEEIEEGVI KHFSHDHTLK FKEGSDGNGE CIQCTICTYP IFSNPFYSCM
401: ECDDFILHKK CVDLPKKKID SFYKMSTSLI TNYQGNAENI CNACQNIYQG FSYLSDDGNT LLDVRCGSIS EPFFHESHPH SLYVSYLTGG RFCNACREKA
501: TMVLSCEECE FVLDIKCSTL PNIVKHENDK DHLLSLCYGE NKCEQCWCEM CEETINPKKW FYSCDHCGIA FHIRCTLGDF IWFKPEKKSE SSTNCVILNN
601: RASRPFCYSC NSRCKYPSIL FFYGKTLCSL QCFQQKVYAI LA
101: IDLICARKKV VATIEVPKTH DHPLSLIPKM ITFTCHLCGL LDDRFPYACN LCDITFHKDC AESTPEINYS CHPQHLLKRL THVPSYTDGK CCLCGSKLHN
201: LFYHCSICNF SVDVNCEKNP PSFTLFHPKA HEHKLTLMPQ RSFVCSACGM DDDPNPYVCP QCNFMIHRSC IDIPRVIKIY RHDHHICYNN FLDAGDWKCG
301: ICHKKINWTC GAYSCSECPD LVMHLRCATR FGIWNGIELE GISKNTLKVK SYEEIEEGVI KHFSHDHTLK FKEGSDGNGE CIQCTICTYP IFSNPFYSCM
401: ECDDFILHKK CVDLPKKKID SFYKMSTSLI TNYQGNAENI CNACQNIYQG FSYLSDDGNT LLDVRCGSIS EPFFHESHPH SLYVSYLTGG RFCNACREKA
501: TMVLSCEECE FVLDIKCSTL PNIVKHENDK DHLLSLCYGE NKCEQCWCEM CEETINPKKW FYSCDHCGIA FHIRCTLGDF IWFKPEKKSE SSTNCVILNN
601: RASRPFCYSC NSRCKYPSIL FFYGKTLCSL QCFQQKVYAI LA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.