Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G29624.1 | Thale cress | cytosol | 68.26 | 58.61 |
| AT5G54050.1 | Thale cress | nucleus | 73.51 | 53.1 |
| AT5G54040.1 | Thale cress | cytosol | 73.99 | 52.01 |
| AT1G58037.1 | Thale cress | cytosol | 40.57 | 49.56 |
| Bra040595.1-P | Field mustard | cytosol | 50.12 | 48.95 |
| AT4G14980.1 | Thale cress | cytosol | 62.53 | 48.07 |
| CDY51540 | Canola | nucleus | 57.76 | 47.17 |
| AT5G54020.2 | Thale cress | nucleus | 65.87 | 46.94 |
| CDY28703 | Canola | cytosol | 54.65 | 45.98 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 59.19 | 45.84 |
| AT2G04500.1 | Thale cress | cytosol | 52.51 | 44.44 |
| AT4G01925.1 | Thale cress | cytosol | 26.25 | 39.29 |
| AT5G45730.1 | Thale cress | nucleus | 47.02 | 35.18 |
| AT3G06990.1 | Thale cress | nucleus | 43.44 | 33.77 |
| AT3G07000.1 | Thale cress | cytosol | 45.11 | 32.93 |
| AT4G11540.1 | Thale cress | cytosol | 37.71 | 30.1 |
| AT2G43220.1 | Thale cress | peroxisome | 38.19 | 29.74 |
| AT5G40320.1 | Thale cress | nucleus | 41.77 | 29.46 |
| AT1G69150.1 | Thale cress | cytosol | 35.08 | 28.43 |
| AT4G16015.1 | Thale cress | cytosol | 35.8 | 28.04 |
| AT5G22355.1 | Thale cress | cytosol | 43.44 | 27.41 |
| AT3G27510.1 | Thale cress | cytosol | 28.4 | 27.05 |
| AT3G48400.1 | Thale cress | cytosol | 39.86 | 26.98 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 38.66 | 26.82 |
| AT4G02190.1 | Thale cress | cytosol | 41.05 | 26.1 |
| AT4G01920.1 | Thale cress | cytosol | 40.33 | 25.68 |
| AT4G01910.1 | Thale cress | cytosol | 39.86 | 25.65 |
| AT4G01740.1 | Thale cress | cytosol | 39.62 | 25.46 |
| AT3G46800.1 | Thale cress | cytosol | 41.29 | 25.37 |
| AT4G01760.1 | Thale cress | cytosol | 40.33 | 25.34 |
| AT4G01930.1 | Thale cress | cytosol | 39.38 | 25.31 |
| AT4G11390.2 | Thale cress | cytosol | 32.94 | 25.27 |
| AT4G11550.1 | Thale cress | cytosol | 40.1 | 25.15 |
| AT2G19660.2 | Thale cress | nucleus | 41.29 | 25.07 |
| AT3G27473.1 | Thale cress | cytosol | 38.9 | 24.62 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 38.42 | 24.54 |
| AT1G65180.1 | Thale cress | nucleus | 37.95 | 24.35 |
| AT4G01350.1 | Thale cress | cytosol | 37.71 | 24.23 |
| AT2G04680.1 | Thale cress | cytosol | 37.95 | 24.2 |
| AT3G46810.1 | Thale cress | cytosol | 39.38 | 24.05 |
| AT5G59940.1 | Thale cress | cytosol | 36.99 | 23.81 |
| AT5G37620.1 | Thale cress | cytosol | 36.99 | 23.77 |
| AT3G28650.1 | Thale cress | cytosol | 37.71 | 23.76 |
| AT2G19650.1 | Thale cress | cytosol | 38.66 | 23.75 |
| AT3G27500.1 | Thale cress | cytosol | 38.9 | 23.55 |
| AT3G27490.1 | Thale cress | cytosol | 37.95 | 23.31 |
| AT5G42840.1 | Thale cress | cytosol | 36.99 | 23.1 |
| AT4G13992.1 | Thale cress | mitochondrion | 35.08 | 22.9 |
| AT3G43890.1 | Thale cress | cytosol | 35.8 | 22.69 |
| AT5G59920.1 | Thale cress | cytosol | 38.42 | 22.68 |
| AT3G45530.1 | Thale cress | cytosol | 36.99 | 22.4 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 29.36 | 20.81 |
| KRH67075 | Soybean | nucleus | 23.39 | 17.19 |
| KRG95394 | Soybean | nucleus | 23.15 | 17.11 |
| AT4G02180.1 | Thale cress | cytosol | 39.86 | 16.89 |
Protein Annotations
| Gene3D:3.30.60.20 | MapMan:35.2 | EntrezGene:835486 | ProteinID:AED96440.1 | ArrayExpress:AT5G54030 | EnsemblPlantsGene:AT5G54030 |
| RefSeq:AT5G54030 | TAIR:AT5G54030 | RefSeq:AT5G54030-TAIR-G | EnsemblPlants:AT5G54030.1 | TAIR:AT5G54030.1 | ProteinID:BAB10733.1 |
| InterPro:DC1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 | GO:GO:0046872 |
| InterPro:IPR002219 | RefSeq:NP_001318797.1 | InterPro:PE/DAG-bd | PFAM:PF03107 | PO:PO:0009005 | PFscan:PS50081 |
| PANTHER:PTHR32410 | UniProt:Q9FN24 | SMART:SM00109 | SUPFAM:SSF57889 | UniParc:UPI000009DC4A | SEG:seg |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9FN24]
Coordinates
chr5:-:21925460..21927524
Molecular Weight (calculated)
48484.3 Da
IEP (calculated)
6.745
GRAVY (calculated)
-0.244
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTDDFEVE TISEIMVPFH HHPLSSYASE FLTSCSLCLF STFLGEIVTR IRYQCMDCGL KLHDECINSL SLNRPFLCNH ILKVYTHIFT SSGRIYENTC
101: HFCQSKLEFL FARCTICNLN VDIECLFALP PLTISEPKHH KHSLSLLLRL VTFTCNACGV EGDRNPYVCL ECNLMVHKDC VENLPRVISI NRHDHRISHT
201: FHLGKKEGDW ECGVCRKMIN CVYGGYKCSR CPSYAVHSRC ATRKEVWDGL ELEDVPEEEE EIEDPFKVIN DKGDIIHFSH EEHVLRLDEN YVIDDANMRC
301: RCCILAINGD PCYRCVECNF ILHEACANLP RKKRHLLHNH KLTLSSTLIN KDIFHECGAC GIYTDGFIYE CRHEDCKKKI IKYDVRCSSV SEPFHHDLHQ
401: HPYTLPCKVR DDVRLVTKK
101: HFCQSKLEFL FARCTICNLN VDIECLFALP PLTISEPKHH KHSLSLLLRL VTFTCNACGV EGDRNPYVCL ECNLMVHKDC VENLPRVISI NRHDHRISHT
201: FHLGKKEGDW ECGVCRKMIN CVYGGYKCSR CPSYAVHSRC ATRKEVWDGL ELEDVPEEEE EIEDPFKVIN DKGDIIHFSH EEHVLRLDEN YVIDDANMRC
301: RCCILAINGD PCYRCVECNF ILHEACANLP RKKRHLLHNH KLTLSSTLIN KDIFHECGAC GIYTDGFIYE CRHEDCKKKI IKYDVRCSSV SEPFHHDLHQ
401: HPYTLPCKVR DDVRLVTKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.