Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G46800.1 | Thale cress | cytosol | 60.06 | 60.41 |
| AT5G37620.1 | Thale cress | cytosol | 52.19 | 54.91 |
| AT2G04680.1 | Thale cress | cytosol | 52.19 | 54.49 |
| AT2G19660.2 | Thale cress | nucleus | 54.23 | 53.91 |
| AT2G19650.1 | Thale cress | cytosol | 50.87 | 51.17 |
| AT4G01925.1 | Thale cress | cytosol | 18.95 | 46.43 |
| AT5G22355.1 | Thale cress | cytosol | 44.61 | 46.08 |
| AT3G48400.1 | Thale cress | cytosol | 40.38 | 44.75 |
| AT1G58037.1 | Thale cress | cytosol | 22.01 | 44.02 |
| AT4G11540.1 | Thale cress | cytosol | 33.67 | 44.0 |
| AT4G01350.1 | Thale cress | cytosol | 41.4 | 43.56 |
| AT5G59940.1 | Thale cress | cytosol | 41.11 | 43.32 |
| AT3G27510.1 | Thale cress | cytosol | 27.7 | 43.18 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 41.25 | 43.14 |
| AT4G01920.1 | Thale cress | cytosol | 41.11 | 42.86 |
| AT4G01910.1 | Thale cress | cytosol | 40.52 | 42.7 |
| AT4G01930.1 | Thale cress | cytosol | 40.38 | 42.48 |
| AT4G01760.1 | Thale cress | cytosol | 41.25 | 42.43 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 33.24 | 42.14 |
| AT4G11550.1 | Thale cress | cytosol | 40.82 | 41.92 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 36.73 | 41.72 |
| AT5G45730.1 | Thale cress | nucleus | 33.67 | 41.25 |
| AT5G40320.1 | Thale cress | nucleus | 35.71 | 41.25 |
| AT3G27473.1 | Thale cress | cytosol | 39.65 | 41.09 |
| AT2G43220.1 | Thale cress | peroxisome | 32.22 | 41.08 |
| AT4G02190.1 | Thale cress | cytosol | 39.36 | 40.97 |
| AT4G01740.1 | Thale cress | cytosol | 38.92 | 40.95 |
| AT4G16015.1 | Thale cress | cytosol | 31.92 | 40.93 |
| AT4G14980.1 | Thale cress | cytosol | 32.51 | 40.92 |
| AT3G06990.1 | Thale cress | nucleus | 31.78 | 40.45 |
| AT3G28650.1 | Thale cress | cytosol | 39.07 | 40.3 |
| AT3G07000.1 | Thale cress | cytosol | 33.67 | 40.24 |
| AT3G43890.1 | Thale cress | cytosol | 38.78 | 40.24 |
| AT1G65180.1 | Thale cress | nucleus | 37.9 | 39.82 |
| AT2G04500.1 | Thale cress | cytosol | 28.72 | 39.8 |
| AT5G59920.1 | Thale cress | cytosol | 41.11 | 39.72 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 34.11 | 39.59 |
| AT5G54030.1 | Thale cress | cytosol | 24.05 | 39.38 |
| AT1G69150.1 | Thale cress | cytosol | 29.59 | 39.27 |
| AT5G54050.1 | Thale cress | nucleus | 32.8 | 38.79 |
| AT4G13992.1 | Thale cress | mitochondrion | 36.01 | 38.47 |
| AT3G27490.1 | Thale cress | cytosol | 38.19 | 38.42 |
| AT5G42840.1 | Thale cress | cytosol | 37.46 | 38.3 |
| AT5G54020.2 | Thale cress | nucleus | 32.8 | 38.27 |
| AT3G27500.1 | Thale cress | cytosol | 38.34 | 38.01 |
| AT3G45530.1 | Thale cress | cytosol | 37.76 | 37.43 |
| AT5G54040.1 | Thale cress | cytosol | 32.36 | 37.25 |
| AT4G11390.2 | Thale cress | cytosol | 29.3 | 36.81 |
| AT5G29624.1 | Thale cress | cytosol | 26.09 | 36.68 |
| AT4G02180.1 | Thale cress | cytosol | 40.52 | 28.11 |
| KRG95394 | Soybean | nucleus | 22.74 | 27.51 |
| KRH67075 | Soybean | nucleus | 22.74 | 27.37 |
Protein Annotations
| MapMan:35.2 | EntrezGene:823834 | ProteinID:AEE78207.1 | ArrayExpress:AT3G46810 | EnsemblPlantsGene:AT3G46810 | RefSeq:AT3G46810 |
| TAIR:AT3G46810 | RefSeq:AT3G46810-TAIR-G | EnsemblPlants:AT3G46810.1 | TAIR:AT3G46810.1 | Unigene:At.35882 | ProteinID:CAB51184.1 |
| InterPro:DC1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 | GO:GO:0046872 |
| InterPro:IPR002219 | RefSeq:NP_190265.1 | InterPro:PE/DAG-bd | PFAM:PF03107 | PO:PO:0009005 | UniProt:Q9STF5 |
| SMART:SM00109 | SMART:SM00249 | SUPFAM:SSF57889 | UniParc:UPI00000A6E91 | InterPro:Znf_PHD | SEG:seg |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9STF5]
Coordinates
chr3:-:17238231..17240623
Molecular Weight (calculated)
78933.7 Da
IEP (calculated)
7.469
GRAVY (calculated)
-0.311
Length
686 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKVVLRVHD HPLLPFERFY FGRCSGCSRE GYFYGGYRCN ELACFAVFHK ECAESKPEIS HHAHPKHLLK LGNRRQRCHL CERPVGIGYF CSICDFGMHL
101: VCAKSPPLSL QPQLSSIENY KVHEHPLKPF KTAWLAETGN CKGCNYIIGN GDSAPFYECR RCKLYIHVTC LELFFTTDAR HNSHLKHPLK YLKNGPPSYA
201: DHKCLLCGRE FEDQQGQKYE LYHCDVCNFS ICISCQGNPP PLVVVTPKTH EHQLHLIPRL LDFTCNACGT QGDRSPYFCL QCNFMIHRGC IDLPRIININ
301: RHDHRISYIC HLGQGNLKCG VCRKTVDGFY GAYSCSKCSS YVVHSLCATR KDVWDMVELE GTPEEEEIAP FEVVDENTIK HMSHDHDLIF NNDGINLHES
401: KLCEACVSQI NTDPFYSCEL CGFILHQTCA NMPRKKRHVL CNIPFSLQTD DSKDSSRLRR KCSLCLQHFT GFAYNLHIAY NSRTEVMDIR CGSIFEPFVH
501: ERHPHPLYYK FFTFSAVAKC DICHITRRHL LCCEECDFRL DFRCATLPKK VMKQRYDDHP LFLSYGENNV DGEYWCDVCE KRVDAKTWFY TCDACGVTLH
601: VSCVVGDFSY HMPGPLSTVV SEYKMVPPAV VSLYKVVPNT SICRPLCSRC HTRCKLPCIL ETSEDGVNVY FCSNDCHKNP WESSYY
101: VCAKSPPLSL QPQLSSIENY KVHEHPLKPF KTAWLAETGN CKGCNYIIGN GDSAPFYECR RCKLYIHVTC LELFFTTDAR HNSHLKHPLK YLKNGPPSYA
201: DHKCLLCGRE FEDQQGQKYE LYHCDVCNFS ICISCQGNPP PLVVVTPKTH EHQLHLIPRL LDFTCNACGT QGDRSPYFCL QCNFMIHRGC IDLPRIININ
301: RHDHRISYIC HLGQGNLKCG VCRKTVDGFY GAYSCSKCSS YVVHSLCATR KDVWDMVELE GTPEEEEIAP FEVVDENTIK HMSHDHDLIF NNDGINLHES
401: KLCEACVSQI NTDPFYSCEL CGFILHQTCA NMPRKKRHVL CNIPFSLQTD DSKDSSRLRR KCSLCLQHFT GFAYNLHIAY NSRTEVMDIR CGSIFEPFVH
501: ERHPHPLYYK FFTFSAVAKC DICHITRRHL LCCEECDFRL DFRCATLPKK VMKQRYDDHP LFLSYGENNV DGEYWCDVCE KRVDAKTWFY TCDACGVTLH
601: VSCVVGDFSY HMPGPLSTVV SEYKMVPPAV VSLYKVVPNT SICRPLCSRC HTRCKLPCIL ETSEDGVNVY FCSNDCHKNP WESSYY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.