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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G27510.1 Thale cress cytosol 47.43 71.36
AT3G27480.1 Thale cress cytosol, nucleus, peroxisome 64.8 71.03
AT5G42840.1 Thale cress cytosol 70.54 69.6
AT3G28650.1 Thale cress cytosol 69.49 69.17
AT3G27500.1 Thale cress cytosol 70.85 67.77
AT3G45530.1 Thale cress cytosol 68.88 65.9
AT3G27490.1 Thale cress cytosol 66.47 64.52
AT4G01925.1 Thale cress cytosol 19.79 46.79
AT4G11540.1 Thale cress cytosol 35.5 44.76
AT1G58037.1 Thale cress cytosol 22.05 42.57
AT4G01930.1 Thale cress cytosol 41.84 42.48
AT4G11550.1 Thale cress cytosol 42.15 41.77
AT2G43220.1 Thale cress peroxisome 33.38 41.08
AT4G01910.1 Thale cress cytosol 40.33 41.01
AT4G01740.1 Thale cress cytosol 40.33 40.95
AT5G45730.1 Thale cress nucleus 34.59 40.89
AT3G06990.1 Thale cress nucleus 33.08 40.63
AT4G01760.1 Thale cress cytosol 40.94 40.63
AT2G04500.1 Thale cress cytosol 30.36 40.61
AT5G22355.1 Thale cress cytosol 40.63 40.51
AT4G01920.1 Thale cress cytosol 40.03 40.27
AT5G44770.1 Thale cress cytosol, nucleus, peroxisome 32.78 40.11
AT3G07000.1 Thale cress cytosol 34.74 40.07
AT5G40320.1 Thale cress nucleus 35.95 40.07
AT4G02190.1 Thale cress cytosol 39.88 40.06
AT1G65180.1 Thale cress nucleus 39.27 39.82
AT3G46810.1 Thale cress cytosol 41.09 39.65
AT4G14980.1 Thale cress cytosol 32.63 39.63
AT2G04680.1 Thale cress cytosol 38.82 39.12
AT5G54030.1 Thale cress cytosol 24.62 38.9
AT4G16015.1 Thale cress cytosol 31.12 38.5
AT4G01350.1 Thale cress cytosol 37.92 38.5
AT3G43890.1 Thale cress cytosol 38.37 38.43
AT5G37620.1 Thale cress cytosol 37.46 38.04
AT3G48400.1 Thale cress cytosol 35.5 37.96
AT1G69150.1 Thale cress cytosol 29.61 37.91
AT3G46800.1 Thale cress cytosol 38.97 37.83
AT2G19650.1 Thale cress cytosol 38.52 37.39
AT5G54050.1 Thale cress nucleus 32.63 37.24
AT4G11390.2 Thale cress cytosol 30.66 37.18
AT5G59940.1 Thale cress cytosol 36.56 37.17
AT3G45840.1 Thale cress mitochondrion, nucleus, peroxisome, vacuole 32.48 36.38
AT5G59930.1 Thale cress cytosol, nucleus, plasma membrane 35.95 36.28
AT5G54020.2 Thale cress nucleus 32.18 36.22
AT5G59920.1 Thale cress cytosol 38.82 36.2
AT2G19660.2 Thale cress nucleus 37.61 36.09
AT5G54040.1 Thale cress cytosol 32.33 35.91
AT5G29624.1 Thale cress cytosol 26.13 35.45
AT4G13992.1 Thale cress mitochondrion 33.53 34.58
KRG95394 Soybean nucleus 23.11 26.98
AT4G02180.1 Thale cress cytosol 40.18 26.9
KRH67075 Soybean nucleus 22.21 25.79
Protein Annotations
Gene3D:3.30.60.20MapMan:35.2EntrezGene:822369ProteinID:AEE77326.1ProteinID:ANM65579.1ArrayExpress:AT3G27473
EnsemblPlantsGene:AT3G27473RefSeq:AT3G27473TAIR:AT3G27473RefSeq:AT3G27473-TAIR-GEnsemblPlants:AT3G27473.1TAIR:AT3G27473.1
Unigene:At.49632ProteinID:BAA95723.2InterPro:DC1GO:GO:0003674GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987
GO:GO:0035556GO:GO:0046872InterPro:IPR002219RefSeq:NP_001327537.1RefSeq:NP_189384.1InterPro:PE/DAG-bd
PFAM:PF03107PO:PO:0000084PO:PO:0009005PO:PO:0009047PFscan:PS50081UniProt:Q9LTY3
SMART:SM00109SMART:SM00249SUPFAM:SSF57889UniParc:UPI000009F969InterPro:Znf_PHD:
Description
CHP-rich zinc finger protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LTY3]
Coordinates
chr3:-:10169123..10171318
Molecular Weight (calculated)
75609.0 Da
IEP (calculated)
6.694
GRAVY (calculated)
-0.288
Length
662 amino acids
Sequence
(BLAST)
001: MTFRLEGHEH RVSIVSSGDS LECDACDRSS GDGFSCSECK FTVHRKCAFV FMTEDIFHHP SHDGHCLKLL TTGAPVHTDS KCHLCGKNTK HLLYHCYDCK
101: VNLDIDCMID GICTLARLSK PWHPHLLLMV DFSSDMWCDF CYEGGKHGYF CPRCRLVIHE SCVSVFDSPE INHPSHLSHP LKLITNGAPD YTEDRSCHIC
201: GKETGNLLYH CDICKFNLDM ECAVENPIPV ALSDLKVHEH TLTLMPRLIS FICDACGTKG DRAPYVCVQC DFRMFHQKCA RLPRVIHVNH HDHRVSYKYP
301: LGPGEWRCGV CWEEIDWSYG AYSCSLCPNY AIHSLCATRK DVWDGKELDG VPEEVEDIEP FKRNDDNTIT HFAHEHNLSL HNDDEESSLC GACVHPIGSY
401: TFYKCSKSYC GFFLHERCAN LATKKRHFLS PQPLDLSLQW IPYVLGRCRA CRQMFSEGFI YNSYRDKFDL LCSSITVPFI HGSHDHHLLY YKLRYGQVKT
501: CQNCGIDETE VLGCSKCNYY LDFCCATLPK TVMLPRYDDH PLTLCYGDEN ASGKYWCDIC ERETNPKTWF YTCKDCGVTF HILCVVGDIR YAKPGGKING
601: DYELLANNSS SRPLCSTCHC RCPGPFILNK ERNNIFFCSY YCLGLSREHA YSSVDVCPPW AI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.