Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G27473.1 | Thale cress | cytosol | 71.36 | 47.43 |
| AT3G27500.1 | Thale cress | cytosol | 74.55 | 47.4 |
| AT3G28650.1 | Thale cress | cytosol | 67.27 | 44.51 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 60.45 | 44.04 |
| AT3G27490.1 | Thale cress | cytosol | 67.05 | 43.26 |
| AT5G42840.1 | Thale cress | cytosol | 65.68 | 43.07 |
| AT3G45530.1 | Thale cress | cytosol | 67.27 | 42.77 |
| AT2G04500.1 | Thale cress | cytosol | 39.77 | 35.35 |
| AT4G11390.2 | Thale cress | cytosol | 41.36 | 33.33 |
| AT4G11540.1 | Thale cress | cytosol | 39.55 | 33.14 |
| AT4G01925.1 | Thale cress | cytosol | 20.45 | 32.14 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 39.32 | 31.98 |
| AT5G40320.1 | Thale cress | nucleus | 42.95 | 31.82 |
| AT2G43220.1 | Thale cress | peroxisome | 38.86 | 31.78 |
| AT5G45730.1 | Thale cress | nucleus | 40.0 | 31.43 |
| AT4G14980.1 | Thale cress | cytosol | 38.86 | 31.38 |
| AT4G16015.1 | Thale cress | cytosol | 37.5 | 30.84 |
| AT3G07000.1 | Thale cress | cytosol | 39.55 | 30.31 |
| AT3G06990.1 | Thale cress | nucleus | 36.59 | 29.87 |
| AT1G58037.1 | Thale cress | cytosol | 23.18 | 29.74 |
| AT5G54050.1 | Thale cress | nucleus | 38.41 | 29.14 |
| AT5G54020.2 | Thale cress | nucleus | 38.86 | 29.08 |
| AT4G11550.1 | Thale cress | cytosol | 43.41 | 28.59 |
| AT4G01740.1 | Thale cress | cytosol | 42.27 | 28.53 |
| AT4G01930.1 | Thale cress | cytosol | 42.27 | 28.53 |
| AT4G01920.1 | Thale cress | cytosol | 42.5 | 28.42 |
| AT5G54030.1 | Thale cress | cytosol | 27.05 | 28.4 |
| AT5G54040.1 | Thale cress | cytosol | 38.41 | 28.36 |
| AT5G29624.1 | Thale cress | cytosol | 30.91 | 27.87 |
| AT5G22355.1 | Thale cress | cytosol | 42.05 | 27.86 |
| AT3G46800.1 | Thale cress | cytosol | 43.18 | 27.86 |
| AT4G01760.1 | Thale cress | cytosol | 42.05 | 27.74 |
| AT3G46810.1 | Thale cress | cytosol | 43.18 | 27.7 |
| AT1G65180.1 | Thale cress | nucleus | 40.91 | 27.57 |
| AT2G04680.1 | Thale cress | cytosol | 41.14 | 27.55 |
| AT3G43890.1 | Thale cress | cytosol | 41.14 | 27.38 |
| AT4G01910.1 | Thale cress | cytosol | 40.23 | 27.19 |
| AT4G02190.1 | Thale cress | cytosol | 40.23 | 26.86 |
| AT2G19650.1 | Thale cress | cytosol | 41.59 | 26.83 |
| AT2G19660.2 | Thale cress | nucleus | 41.59 | 26.52 |
| AT5G37620.1 | Thale cress | cytosol | 38.86 | 26.23 |
| AT1G69150.1 | Thale cress | cytosol | 30.68 | 26.11 |
| AT4G01350.1 | Thale cress | cytosol | 38.64 | 26.07 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 38.86 | 26.07 |
| AT3G48400.1 | Thale cress | cytosol | 36.36 | 25.85 |
| AT5G59940.1 | Thale cress | cytosol | 36.82 | 24.88 |
| AT5G59920.1 | Thale cress | cytosol | 39.77 | 24.65 |
| AT4G13992.1 | Thale cress | mitochondrion | 34.77 | 23.83 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 31.82 | 23.69 |
| KRG95394 | Soybean | nucleus | 27.27 | 21.16 |
| KRH67075 | Soybean | nucleus | 26.14 | 20.18 |
| AT4G02180.1 | Thale cress | cytosol | 42.27 | 18.81 |
Protein Annotations
| ArrayExpress:AT3G27510 | EnsemblPlants:AT3G27510.1 | EnsemblPlantsGene:AT3G27510 | EntrezGene:822373 | InterPro:DC1 | PANTHER:PTHR32410 |
| PFAM:PF03107 | PO:PO:0000084 | ProteinID:AEE77332.1 | RefSeq:AT3G27510 | RefSeq:AT3G27510-TAIR-G | RefSeq:NP_189388.2 |
| SEG:seg | SUPFAM:SSF57889 | TAIR:AT3G27510 | TAIR:AT3G27510.1 | Unigene:At.50230 | UniParc:UPI00005DC211 |
| UniProt:F4IWJ8 | MapMan:35.2 | : | : | : | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4IWJ8]
Coordinates
chr3:-:10188134..10190344
Molecular Weight (calculated)
50663.7 Da
IEP (calculated)
7.441
GRAVY (calculated)
-0.265
Length
440 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKLISFVCD ACGTKGDRSP YICVQCDFMI FHQKCARLPQ VINVNHHDHR VSFKYPLGPG EWRCGVCWEE IDWSYGAYSC SVCPRYAIHS LCATRRDVWD
101: GKELNRVPEK VEYIEPFKRN DDNTITHFAH EHNLTSLGQG GEESSLCGGC VCPIGSCTFY KCLESKCSFI LHETCANLRK KKRHFLSPQP LTLCLESYLL
201: PYSCEACHQV FFHGFSYSTY LRKSLDIFCS SITVPLIHGS HDHHLLYLKQ RFGDVKTCQS CGMDETEVVI GCMKCDYFLD FRCATLPLTV TLPRYDDHPL
301: TLCYGEEKAS GKYWCDICER ETNPKTWFYT CKDCGITLHV FCVVGDIIYA KEGKHIIYDD NSLLSNNSSS RPLCHNCHCR CPGSFILRAE KWGYSEKRRE
401: VKFFCSYYCF IISGYAEREV SKIKLRSPPW TIGNQIQLME
101: GKELNRVPEK VEYIEPFKRN DDNTITHFAH EHNLTSLGQG GEESSLCGGC VCPIGSCTFY KCLESKCSFI LHETCANLRK KKRHFLSPQP LTLCLESYLL
201: PYSCEACHQV FFHGFSYSTY LRKSLDIFCS SITVPLIHGS HDHHLLYLKQ RFGDVKTCQS CGMDETEVVI GCMKCDYFLD FRCATLPLTV TLPRYDDHPL
301: TLCYGEEKAS GKYWCDICER ETNPKTWFYT CKDCGITLHV FCVVGDIIYA KEGKHIIYDD NSLLSNNSSS RPLCHNCHCR CPGSFILRAE KWGYSEKRRE
401: VKFFCSYYCF IISGYAEREV SKIKLRSPPW TIGNQIQLME
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.