Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52789 | Canola | cytosol | 70.0 | 48.28 |
| AT1G58037.1 | Thale cress | cytosol | 45.36 | 37.03 |
| CDY21921 | Canola | plastid | 48.93 | 36.05 |
| AT4G11540.1 | Thale cress | cytosol | 67.14 | 35.81 |
| AT4G01930.1 | Thale cress | cytosol | 79.64 | 34.2 |
| AT4G01910.1 | Thale cress | cytosol | 78.21 | 33.64 |
| AT4G01920.1 | Thale cress | cytosol | 77.86 | 33.13 |
| CDY52787 | Canola | nucleus | 73.93 | 32.81 |
| CDY69979 | Canola | nucleus | 72.86 | 32.03 |
| AT4G01740.1 | Thale cress | cytosol | 73.93 | 31.75 |
| AT4G01760.1 | Thale cress | cytosol | 73.93 | 31.03 |
| CDY65338 | Canola | cytosol | 72.14 | 30.15 |
| AT4G11550.1 | Thale cress | cytosol | 71.79 | 30.09 |
| AT4G02190.1 | Thale cress | cytosol | 70.36 | 29.89 |
| CDY22052 | Canola | nucleus | 67.5 | 29.86 |
| CDY22034 | Canola | endoplasmic reticulum | 66.79 | 29.73 |
| CDY22036 | Canola | cytosol | 61.43 | 28.86 |
| AT1G69150.1 | Thale cress | cytosol | 51.43 | 27.85 |
| AT4G11390.2 | Thale cress | cytosol | 53.57 | 27.47 |
| AT5G54030.1 | Thale cress | cytosol | 39.29 | 26.25 |
| AT5G45730.1 | Thale cress | nucleus | 49.64 | 24.82 |
| AT1G65180.1 | Thale cress | nucleus | 55.0 | 23.58 |
| AT3G43890.1 | Thale cress | cytosol | 55.36 | 23.45 |
| AT3G07000.1 | Thale cress | cytosol | 47.5 | 23.17 |
| AT3G06990.1 | Thale cress | nucleus | 44.29 | 23.01 |
| AT4G14980.1 | Thale cress | cytosol | 43.93 | 22.57 |
| CDY50383 | Canola | cytosol | 67.86 | 22.54 |
| AT2G43220.1 | Thale cress | peroxisome | 43.21 | 22.49 |
| AT4G02180.1 | Thale cress | cytosol | 79.29 | 22.45 |
| AT2G04500.1 | Thale cress | cytosol | 39.29 | 22.22 |
| CDY22035 | Canola | cytosol | 68.57 | 21.67 |
| AT4G16015.1 | Thale cress | cytosol | 40.71 | 21.31 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 40.71 | 21.07 |
| AT5G22355.1 | Thale cress | cytosol | 48.57 | 20.48 |
| AT3G27510.1 | Thale cress | cytosol | 32.14 | 20.45 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 43.93 | 20.36 |
| AT5G54050.1 | Thale cress | nucleus | 42.14 | 20.34 |
| AT5G40320.1 | Thale cress | nucleus | 42.5 | 20.03 |
| AT5G29624.1 | Thale cress | cytosol | 34.64 | 19.88 |
| AT5G54040.1 | Thale cress | cytosol | 42.14 | 19.8 |
| AT3G27473.1 | Thale cress | cytosol | 46.79 | 19.79 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 46.07 | 19.66 |
| CDY50382 | Canola | cytosol | 69.64 | 19.66 |
| AT5G37620.1 | Thale cress | cytosol | 45.71 | 19.63 |
| AT5G54020.2 | Thale cress | nucleus | 40.71 | 19.39 |
| AT2G04680.1 | Thale cress | cytosol | 45.36 | 19.33 |
| AT3G28650.1 | Thale cress | cytosol | 45.71 | 19.25 |
| AT3G45530.1 | Thale cress | cytosol | 47.5 | 19.22 |
| AT3G46800.1 | Thale cress | cytosol | 46.79 | 19.21 |
| AT2G19660.2 | Thale cress | nucleus | 47.14 | 19.13 |
| AT3G48400.1 | Thale cress | cytosol | 42.14 | 19.06 |
| AT3G46810.1 | Thale cress | cytosol | 46.43 | 18.95 |
| AT3G27500.1 | Thale cress | cytosol | 46.79 | 18.93 |
| AT3G27490.1 | Thale cress | cytosol | 46.07 | 18.91 |
| AT5G42840.1 | Thale cress | cytosol | 45.0 | 18.78 |
| AT4G01350.1 | Thale cress | cytosol | 43.21 | 18.56 |
| AT4G13992.1 | Thale cress | mitochondrion | 42.14 | 18.38 |
| AT5G59920.1 | Thale cress | cytosol | 46.07 | 18.17 |
| AT2G19650.1 | Thale cress | cytosol | 43.93 | 18.04 |
| AT5G59940.1 | Thale cress | cytosol | 41.07 | 17.67 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 27.5 | 13.03 |
| Bra036288.1-P | Field mustard | cytosol, nucleus, plasma membrane | 73.21 | 12.25 |
| KRG95394 | Soybean | nucleus | 16.07 | 7.94 |
| KRH67075 | Soybean | nucleus | 15.36 | 7.54 |
Protein Annotations
| ArrayExpress:AT4G01925 | EnsemblPlants:AT4G01925.1 | EnsemblPlantsGene:AT4G01925 | EntrezGene:828202 | InterPro:DC1 | PANTHER:PTHR32410 |
| PFAM:PF03107 | ProteinID:AEE82100.1 | RefSeq:AT4G01925 | RefSeq:AT4G01925-TAIR-G | RefSeq:NP_680558.2 | SEG:seg |
| SUPFAM:SSF57889 | TAIR:AT4G01925 | TAIR:AT4G01925.1 | UniParc:UPI0001E92EFA | UniProt:F4JH56 | MapMan:35.2 |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4JH56]
Coordinates
chr4:-:833063..834340
Molecular Weight (calculated)
32086.5 Da
IEP (calculated)
6.851
GRAVY (calculated)
-0.278
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MWEECELHFH VDCVWHPTEL KHPLEVNHPY HALHPLKLLT ARFPDYSDGK CRLCGSKIDD RLFYHCSSCN FTLGLCCVLR PPQPSLLNLK AHDHQLTLLP
101: RLDSFTCNAC GLKGDRSPYI CFQCGFMIHQ DCLGPPRLIN INRHDHRVVR TSVLGVVNSV CGVCRQKVDW TCGGFSCQRC PDYVAHSKCA TREDVWNGEE
201: LEGVPEEIED IEPYVVIDDN TIQHFSHKEH YLRLHDNGLL CDDNKRCCEL RCIFPIILKR LGASQKYCCS PYCANAMSVN
101: RLDSFTCNAC GLKGDRSPYI CFQCGFMIHQ DCLGPPRLIN INRHDHRVVR TSVLGVVNSV CGVCRQKVDW TCGGFSCQRC PDYVAHSKCA TREDVWNGEE
201: LEGVPEEIED IEPYVVIDDN TIQHFSHKEH YLRLHDNGLL CDDNKRCCEL RCIFPIILKR LGASQKYCCS PYCANAMSVN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.