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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX81261
CDX86029
CDX99153
CDY03408
CDY08844
CDY11652
CDY14517
CDY18692
CDY21814
CDY31298
CDY34322
CDY46357
CDY46828
CDY48156
CDY53953
CDY56082
CDY66333
CDY68857

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G01920.1 CDY11652 AT1G69810.1 21798944
AT4G01920.1 CDY56082 AT1G69810.1 21798944
AT4G01920.1 CDY68857 AT1G69810.1 21798944
AT4G01920.1 CDY46357 AT3G28715.1 21798944
AT4G01920.1 CDX86029 AT3G45640.1 21798944
AT4G01920.1 CDX99153 AT3G45640.1 21798944
AT4G01920.1 CDY21814 AT3G48210.1 21798944
AT4G01920.1 CDY48156 AT3G48210.1 21798944
AT4G01920.1 CDY53953 AT3G48210.1 21798944
AT4G01920.1 CDY66333 AT4G15700.1 21798944
AT4G01920.1 CDY03408 AT4G24900.1 21798944
AT4G01920.1 CDY34322 AT4G24900.1 21798944
AT4G01920.1 CDX81261 AT5G64850.1 21798944
AT4G01920.1 CDY08844 AT5G64850.1 21798944
AT4G01920.1 CDY14517 AT5G64850.1 21798944
AT4G01920.1 CDY18692 AT5G64850.1 21798944
AT4G01920.1 CDY31298 AT5G64850.1 21798944
AT4G01920.1 CDY46828 AT5G64850.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52787 Canola nucleus 61.92 82.73
CDY69979 Canola nucleus 59.79 79.12
CDY22052 Canola nucleus 56.82 75.67
CDY52789 Canola cytosol 35.47 73.65
CDY65338 Canola cytosol 58.48 73.58
CDY22036 Canola cytosol 51.84 73.32
CDY22034 Canola endoplasmic reticulum 51.36 68.84
AT4G11540.1 Thale cress cytosol 42.7 68.57
AT4G01925.1 Thale cress cytosol 22.54 67.86
CDY21921 Canola plastid 30.49 67.63
CDX97701 Canola cytosol 16.96 67.45
AT4G01910.1 Thale cress cytosol 50.77 65.75
AT4G01930.1 Thale cress cytosol 50.42 65.18
AT4G01920.1 Thale cress cytosol 50.18 64.29
AT4G01760.1 Thale cress cytosol 50.3 63.57
AT4G01740.1 Thale cress cytosol 48.64 62.88
AT4G11550.1 Thale cress cytosol 49.7 62.72
AT4G02190.1 Thale cress cytosol 48.75 62.37
CDY22035 Canola cytosol 58.6 55.76
AT4G11390.2 Thale cress cytosol 35.23 54.4
CDY50382 Canola cytosol 63.35 53.83
CDY06776 Canola cytosol 15.3 45.26
CDY52927 Canola cytosol 19.81 44.3
CDY48718 Canola cytosol 19.45 44.2
CDY30196 Canola cytosol 21.12 43.52
CDY29992 Canola cytosol 13.52 43.51
CDY51540 Canola nucleus 26.45 43.47
CDY41709 Canola peroxisome 26.69 42.78
CDY46706 Canola mitochondrion 26.93 42.59
CDY28703 Canola cytosol 25.15 42.57
CDY58516 Canola nucleus 25.27 42.43
AT4G02180.1 Thale cress cytosol 49.58 42.26
CDY63460 Canola cytosol, mitochondrion 20.52 41.59
CDY63456 Canola cytosol 19.22 41.01
CDX93183 Canola cytosol 32.15 40.69
CDY27940 Canola cytosol 27.16 40.6
CDY09238 Canola cytosol 22.66 40.21
CDY36839 Canola cytosol 28.71 40.0
CDY09240 Canola cytosol 22.54 40.0
CDX74184 Canola plasma membrane 18.98 39.02
CDY60784 Canola cytosol 15.42 38.69
CDX74183 Canola cytosol 15.66 38.37
CDY64703 Canola cytosol 29.89 37.95
CDY30007 Canola cytosol, nucleus, plastid 29.77 37.74
CDX67463 Canola cytosol 20.76 37.72
CDY63290 Canola cytosol 22.42 37.65
CDX88733 Canola cytosol 27.64 37.34
CDX71062 Canola cytosol 27.52 37.06
CDY29993 Canola cytosol 26.81 36.63
CDY44167 Canola cytosol 21.23 36.38
CDY21132 Canola cytosol 26.33 36.27
CDY22883 Canola cytosol 27.64 35.68
CDY27938 Canola cytosol 18.51 35.54
CDY44574 Canola cytosol 20.28 35.48
CDY43524 Canola cytosol 21.0 34.98
CDY36353 Canola plastid 11.98 32.37
CDY40661 Canola cytosol 29.18 32.28
CDY42579 Canola nucleus 10.08 31.02
CDX82703 Canola cytosol 31.91 27.88
KRG95394 Soybean nucleus 18.62 27.69
KRH67075 Soybean nucleus 18.03 26.67
Protein Annotations
MapMan:19.1.6.2Gene3D:2.60.40.790GO:A0A078IMY1UniProt:A0A078IMY1EnsemblPlants:CDY50383ProteinID:CDY50383
ProteinID:CDY50383.1InterPro:CS_domInterPro:DC1GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0007154GO:GO:0007165GO:GO:0008150
GO:GO:0009987GO:GO:0035556GO:GO:0046872GO:GO:0047134EnsemblPlantsGene:GSBRNA2T00096604001InterPro:HSP20-like_chaperone
InterPro:IPR002219InterPro:IPR007052InterPro:IPR008978InterPro:PE/DAG-bdPFAM:PF03107PFAM:PF04969
PFscan:PS50081PFscan:PS51203SMART:SM00249SUPFAM:SSF49764SUPFAM:SSF57889UniParc:UPI0004EDAECB
InterPro:Znf_PHDSEG:seg::::
Description
BnaCnng19150DBnaCnng19150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMY1]
Coordinates
chrLK032905:+:45012..49231
Molecular Weight (calculated)
95249.1 Da
IEP (calculated)
5.948
GRAVY (calculated)
-0.530
Length
843 amino acids
Sequence
(BLAST)
001: MESEGVSLPL FDEHPMMPWN DLRKGDCCGR YESQSDGYYC KLCVFFVHKK CGNDDLSEYI DHPSHPDHTL ELRHESRYNY CDLCGWKIAK LFYRCDMCDF
101: DLDLHCAKRQ PPNVIDNFET HPHKLILLKN RTMFDCSAEC GKARVGLPYK CDECDVSFHV DCLNYSPEVN HPYHSLHPLK LLTGPPPDYS DGKCRLCGRK
201: VDKELFYHCS SCNFTLDMPC VLHPPPQVAV DLKAHDHQLT LLPRLLSFTC NACGLKGDRS PYMCVQCDFM IHQDCIGLPR VININRHDHR VSRTLLLGVV
301: DSVCGVCRKK VDWTCGGFSC KRCPGYVVHS KCATRGDVWN GKELEGVPEE EEEDTKPYVE IDENTIQHFS HKVHYLRRIH GNGVLYEENK RCSACTHPVG
401: LHSFYTCVDC DFSLHQKCAE CPKRKRHVLH NERLTLDTNK DLEVFRCDAC YRRSNGFMYK DGDKMIDVLC GSISEPFVHP SHPHHPLYYI PTENDDKICN
501: GCNRREPHVL RCIEGDCGFV LCFECATEPK VVKHRVDDHP LSLCYGEEEE ASGKYWCDIC EKETDSKEWF YTCKDQRASL HRKCVLGDST GLMPRTVAKL
601: NGESFEVVLN NSVTRPFCKG WSPSLFSNKG SSFSKLHPLK MSRHPEVKWA ETTDKIFLTV VLADSKETKV NLDPEGAFDF SAEAGPENHV YELKLELHGK
701: VNVEESKINI GVRSIFCIIE KAEPERWNKL IGGGKAPHYV KIDCDKWVDE DDEGSAGAGD MDMGGMGGMD FSNFGGMGGM EGLGGMGGLG GMAEVEGLGG
801: MGGMGGMEEF EDSDDEEFAK PGDKKDEAVK EEAKPVDVVK EDK
Best Arabidopsis Sequence Match ( AT4G01760.1 )
(BLAST)
001: MDSDGVSVPL IHEHLMMPCN DLRRGDCCER LEAISDGYYC TTCDFFVHKK CGDEASECIE NPFHSNHPLR LGFLSRLQRQ HWLKVVRSCD LCGKNIGDLF
101: YRCEICDFDM DLHCAKYPPL EVIDIPEMHS HKLNLLKDRV EFDCDAKCGK IGYGFPYECH ECDSKFHVDC VRYSSSEEVK HPLEVNHSYH SLHPLKLLMG
201: QPPDYSDGKC RLCGRKIDDK LFYHCSSCNF TLDMRCVLNP PPKSVLDLKT HDHQLNLLPR LIFFTCNACG LNGDRSPYAC FQCDFLIHKD CFGLPRLINI
301: NRHDHRISRT SLIGIVNSVC GVCRQKVDWT CGGYSCQRCS TYIAHSKCAT REDVWNGKEL EGVPEEIEDI EPYVVIDDNT IQHFSHKEHY MRLNVNGLMC
401: EVNKRCNACN HPISPQSFYG CMDCDFILHQ NCAGFPRRKW HVLHNERLAL VTSEVNIFGC SACHKIFNGF RYEHEDTKLD VLCGSFSEPF IHPSHPHHPL
501: YCISPEDDEV CSGCNERSYH VLRCIEDNCG FILDFGCATF PQVVKHRIED QPLSLCYGEK ASGKYWCDIC EKETNPNTWF YTCKDHRASL HTWCVLGDFM
601: GLIPKSTIEL WNISYEVVLN NSISRPICRH CKSHCIPPII LKKIGTSDPY FCSLDCIESF KRLWRAK
Arabidopsis Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZSJ1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.