CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75812
CDX82445
CDY11652
CDY39879
CDY56082
CDY68857

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69810.1	CDY11652	AT1G69810.1	21798944
AT1G69810.1	CDY56082	AT1G69810.1	21798944
AT1G69810.1	CDY68857	AT1G69810.1	21798944
AT1G69810.1	CDY39879	AT2G25000.1	21798944
AT1G69810.1	CDX75812	AT3G15160.1	21798944
AT1G69810.1	CDX82445	AT3G15160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56082	Canola	nucleus	95.95	92.69
CDY11652	Canola	nucleus	76.76	74.15
AT1G69810.1	Thale cress	nucleus	74.32	71.06
CDX86714	Canola	nucleus	14.86	64.71
CDX97845	Canola	nucleus	21.08	32.37
CDX81493	Canola	nucleus	23.78	28.39
CDY26717	Canola	nucleus	21.08	27.18
CDY01891	Canola	nucleus	23.51	26.52
CDX96692	Canola	nucleus	36.76	26.31
CDX96044	Canola	nucleus	22.97	25.91
CDX83804	Canola	nucleus	35.95	25.83
CDY63770	Canola	nucleus	35.68	25.68
CDX81900	Canola	nucleus	35.14	25.05
CDX85563	Canola	nucleus	20.81	24.84
CDY21693	Canola	nucleus	34.59	24.66
CDX69548	Canola	nucleus	28.65	24.54
CDX70593	Canola	nucleus	34.86	24.52
CDX78611	Canola	nucleus	34.59	24.29
CDX85052	Canola	nucleus	35.41	23.82
CDX69549	Canola	nucleus	35.41	23.77
CDY22006	Canola	nucleus	30.81	23.27
CDY67287	Canola	nucleus	18.11	23.1
CDY22299	Canola	nucleus	18.11	23.1
CDY07121	Canola	nucleus	30.81	23.03
CDX88573	Canola	nucleus	18.65	22.92
CDX94553	Canola	nucleus	30.27	22.81
CDY16669	Canola	nucleus	30.27	22.76
CDX79347	Canola	nucleus	18.11	22.48
CDX87347	Canola	nucleus	18.11	22.33
CDX82900	Canola	nucleus	31.35	22.26
CDX67971	Canola	nucleus	17.84	22.22
CDX72327	Canola	nucleus	17.03	22.11
CDY12937	Canola	nucleus	32.97	22.1
CDY28692	Canola	nucleus	31.89	21.93
CDX75196	Canola	nucleus	16.76	21.91
CDY21301	Canola	nucleus	30.0	21.89
CDX90863	Canola	nucleus	29.73	21.7
CDY19535	Canola	nucleus	32.16	21.56
CDY24892	Canola	nucleus	30.27	21.37
CDY08634	Canola	nucleus	28.92	21.27
CDY39879	Canola	nucleus	17.57	21.17
CDX68787	Canola	nucleus	17.3	20.06
CDY72612	Canola	nucleus	11.89	18.26
CDY70096	Canola	nucleus	16.76	17.97
CDY19255	Canola	nucleus	10.54	16.39
CDX86713	Canola	nucleus	0.81	2.54

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:A0A078JTU7	UniProt:A0A078JTU7	EnsemblPlants:CDY68857	ProteinID:CDY68857
ProteinID:CDY68857.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00080444001	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31429	PANTHER:PTHR31429:SF24	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0004EEEE58	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

BnaCnng60780DBnaCnng60780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JTU7]

Coordinates

chrLK038142:+:1909..3977

Molecular Weight (calculated)

41413.3 Da

IEP (calculated)

6.455

GRAVY (calculated)

-0.817

Length

370 amino acids

Sequence
(BLAST)

001: MIKEEIDSCV HPLDGGMAES DKEVELDATK AKVDKVREEN EKLKLLLSTF LTEYNSLQMH VSNVIRQQHE ASMKLDDNGH EDLDVDISLT LGRSEQKISK
101: KEEQVKKIIA ENNSINNKEG SEKKIWAHGL GFRIQSFEDL DTNQTMMLDD VSREVKNKNV ENKCLSSRKD VKTARNEDQH ELLEEHEQPG LKKTRVCVKA
201: PCEDPSINDG CQWRKYGQKT AKTNPLPRAY YRCSMSSNCP VRKQVQRCGE DDTSAYMTTY EGNHDHPLPM EATHMAAGTS AAASLLQSGA SSSASLSHFF
301: PFHHFSVSTT NSHPTVTLDL TQPNYDPNQL PNYPLSSSSL SFSSSGRPSP SKSHTLSFSG LRSQAPMNTY

Best Arabidopsis Sequence Match ( AT1G69810.1 )
(BLAST)

001: MIKEETVSYF QTFDGVMAES DKEEELDATK AKVEKVREEN EKLKLLLSTI LNNYNSLQMQ VSKVLGQQQG ASSMELDHID RQDENNDYDV DISLRLGRSE
101: QKISKKEENK VDKISTKNVE ESKDKRSALG FGFQIQSYEA SKLDDLCRQV KLANAENKCV SSRKDVKSVR NENHQDVLEE HEQTGLKKTR VCVKASCEDP
201: SINDGCQWRK YGQKTAKTNP LPRAYYRCSM SSNCPVRKQV QRCGEEETSA FMTTYEGNHD HPLPMEASHM AAGTSAAASL LQSGSSSSSS STSASLSYFF
301: PFHHFSISTT NSHPTVTLDL TRPNYPNQLP DDYPLSSSSF SLNFSSPDPP PPSSHDHTLN FSGLRTQAPL STDSLLARYR TRLSGQQ

Arabidopsis Description

WRKY36At1g69810 [Source:UniProtKB/TrEMBL;Acc:Q058I4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.