Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011299.1-P | Field mustard | nucleus | 95.3 | 95.9 |
| CDX75196 | Canola | nucleus | 83.07 | 93.64 |
| CDX72327 | Canola | nucleus | 76.8 | 85.96 |
| CDY39879 | Canola | nucleus | 80.56 | 83.71 |
| AT4G31800.1 | Thale cress | nucleus | 79.62 | 81.94 |
| CDY70096 | Canola | nucleus | 74.29 | 68.7 |
| GSMUA_Achr7P19340_001 | Banana | nucleus | 31.66 | 52.6 |
| CDX86714 | Canola | nucleus | 13.48 | 50.59 |
| PGSC0003DMT400019058 | Potato | nucleus | 39.19 | 47.89 |
| GSMUA_Achr5P16460_001 | Banana | nucleus | 34.48 | 46.81 |
| KRH61669 | Soybean | nucleus | 31.97 | 46.36 |
| GSMUA_Achr2P05100_001 | Banana | nucleus | 27.59 | 46.32 |
| Solyc08g067340.2.1 | Tomato | nucleus | 36.68 | 46.25 |
| Solyc08g067360.2.1 | Tomato | nucleus | 37.3 | 46.12 |
| GSMUA_Achr10P... | Banana | nucleus | 33.54 | 46.12 |
| PGSC0003DMT400019061 | Potato | nucleus | 36.36 | 45.85 |
| KRH15674 | Soybean | nucleus | 39.81 | 45.04 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 43.57 | 43.85 |
| CDY22299 | Canola | nucleus | 39.19 | 43.1 |
| GSMUA_Achr3P13440_001 | Banana | nucleus | 36.99 | 42.91 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 37.62 | 42.86 |
| CDY67287 | Canola | nucleus | 38.87 | 42.76 |
| GSMUA_Achr11P... | Banana | nucleus | 32.6 | 42.45 |
| CDX67971 | Canola | nucleus | 39.5 | 42.42 |
| CDX88573 | Canola | nucleus | 39.5 | 41.86 |
| CDX79347 | Canola | nucleus | 38.87 | 41.61 |
| CDX87347 | Canola | nucleus | 38.56 | 41.0 |
| HORVU5Hr1G065380.2 | Barley | nucleus | 22.26 | 40.8 |
| GSMUA_Achr10P... | Banana | nucleus | 36.05 | 39.93 |
| KRH05350 | Soybean | nucleus | 38.56 | 39.42 |
| GSMUA_Achr7P16090_001 | Banana | endoplasmic reticulum, nucleus, plastid | 27.27 | 39.01 |
| GSMUA_Achr4P01930_001 | Banana | extracellular, golgi | 33.54 | 37.02 |
| Os02t0181300-01 | Rice | nucleus | 39.19 | 35.92 |
| TraesCS6A01G146900.1 | Wheat | nucleus | 39.19 | 35.71 |
| TraesCS6D01G136200.1 | Wheat | nucleus | 38.87 | 35.63 |
| KRH52329 | Soybean | nucleus | 34.48 | 35.6 |
| Zm00001d053746_P001 | Maize | nucleus | 35.74 | 35.51 |
| TraesCS7D01G497400.1 | Wheat | nucleus | 36.36 | 35.47 |
| Os06t0649000-01 | Rice | nucleus | 36.99 | 35.01 |
| TraesCS7D01G497800.1 | Wheat | nucleus | 35.74 | 34.97 |
| TraesCS7B01G418500.2 | Wheat | nucleus | 36.05 | 34.95 |
| TraesCS7B01G418400.1 | Wheat | nucleus | 35.42 | 34.66 |
| TraesCS7A01G508700.1 | Wheat | nucleus | 35.11 | 34.57 |
| HORVU6Hr1G028790.1 | Barley | nucleus | 38.24 | 34.56 |
| HORVU7Hr1G113830.1 | Barley | nucleus | 34.48 | 34.48 |
| TraesCS7B01G419400.1 | Wheat | nucleus | 34.8 | 34.47 |
| TraesCS7D01G497700.1 | Wheat | nucleus | 35.42 | 34.45 |
| TraesCS7A01G508800.1 | Wheat | nucleus | 35.11 | 34.25 |
| Zm00001d015515_P001 | Maize | nucleus | 36.99 | 34.01 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 37.62 | 33.8 |
| GSMUA_Achr1P10080_001 | Banana | nucleus | 35.42 | 33.73 |
| EES04642 | Sorghum | nucleus | 38.24 | 33.52 |
| EER90124 | Sorghum | nucleus | 35.74 | 33.33 |
| TraesCS7B01G418600.1 | Wheat | nucleus | 30.09 | 33.22 |
| Zm00001d046805_P001 | Maize | nucleus | 36.36 | 33.05 |
| TraesCS5B01G224000.1 | Wheat | nucleus | 34.17 | 32.93 |
| Zm00001d020492_P001 | Maize | nucleus | 31.03 | 32.78 |
| TraesCS5D01G232800.1 | Wheat | nucleus | 33.86 | 32.63 |
| TraesCS5D01G232700.1 | Wheat | nucleus | 27.59 | 32.47 |
| EER88729 | Sorghum | nucleus | 35.42 | 32.47 |
| TraesCS5A01G225500.1 | Wheat | nucleus | 27.27 | 32.1 |
| TraesCS5A01G225600.1 | Wheat | nucleus | 33.23 | 32.02 |
| Zm00001d036726_P001 | Maize | nucleus | 34.48 | 31.98 |
| Zm00001d020495_P001 | Maize | nucleus | 26.65 | 31.95 |
| TraesCS7A01G509000.1 | Wheat | nucleus | 34.8 | 31.9 |
| EER98905 | Sorghum | nucleus, plastid | 31.97 | 31.19 |
| Os09t0417600-02 | Rice | nucleus | 31.97 | 31.19 |
| TraesCS5B01G224100.1 | Wheat | nucleus | 31.97 | 30.91 |
| KXG35639 | Sorghum | nucleus | 28.53 | 30.85 |
| TraesCS7D01G497300.1 | Wheat | plastid | 35.74 | 30.65 |
| Os09t0417800-01 | Rice | nucleus | 28.53 | 28.62 |
| TraesCS5D01G232900.1 | Wheat | nucleus | 32.92 | 28.3 |
| HORVU7Hr1G113850.4 | Barley | nucleus, plastid | 35.74 | 28.08 |
| HORVU5Hr1G065420.15 | Barley | nucleus | 32.6 | 26.6 |
| Zm00001d005749_P001 | Maize | nucleus | 29.15 | 26.5 |
| CDX97845 | Canola | nucleus | 16.93 | 22.41 |
| CDY26717 | Canola | nucleus | 18.18 | 20.21 |
| CDX81493 | Canola | nucleus | 18.5 | 19.03 |
| CDX96044 | Canola | nucleus | 19.12 | 18.6 |
| CDY01891 | Canola | nucleus | 19.12 | 18.6 |
| CDY11652 | Canola | nucleus | 21.94 | 18.28 |
| CDY16669 | Canola | nucleus | 27.9 | 18.09 |
| CDX94553 | Canola | nucleus | 27.59 | 17.92 |
| CDY12937 | Canola | nucleus | 30.09 | 17.39 |
| CDY19535 | Canola | nucleus | 30.09 | 17.39 |
| CDY68857 | Canola | nucleus | 20.06 | 17.3 |
| CDY56082 | Canola | nucleus | 20.69 | 17.23 |
| CDX82900 | Canola | nucleus | 27.9 | 17.08 |
| CDY22006 | Canola | nucleus | 26.02 | 16.94 |
| CDY24892 | Canola | nucleus | 27.59 | 16.79 |
| CDX90863 | Canola | nucleus | 26.65 | 16.77 |
| CDY21301 | Canola | nucleus | 26.65 | 16.77 |
| CDX69548 | Canola | nucleus | 22.57 | 16.67 |
| CDY07121 | Canola | nucleus | 25.71 | 16.57 |
| CDY63770 | Canola | nucleus | 26.02 | 16.15 |
| CDX85563 | Canola | nucleus | 15.67 | 16.13 |
| CDX70593 | Canola | nucleus | 26.33 | 15.97 |
| CDY08634 | Canola | nucleus | 25.08 | 15.9 |
| CDX78611 | Canola | nucleus | 26.02 | 15.75 |
| CDX81900 | Canola | nucleus | 25.08 | 15.41 |
| CDY21693 | Canola | nucleus | 25.08 | 15.41 |
| CDX96692 | Canola | nucleus | 24.76 | 15.28 |
| CDX69549 | Canola | nucleus | 26.33 | 15.24 |
| CDX83804 | Canola | nucleus | 24.45 | 15.15 |
| CDX85052 | Canola | nucleus | 26.02 | 15.09 |
| CDY28692 | Canola | nucleus | 25.08 | 14.87 |
| CDY19255 | Canola | nucleus | 9.72 | 13.03 |
| CDX86713 | Canola | nucleus | 3.13 | 8.47 |
| CDY72612 | Canola | nucleus | 5.33 | 7.05 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078BWY2 | EnsemblPlants:CDX68787 | ProteinID:CDX68787 | ProteinID:CDX68787.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00130498001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 |
| PANTHER:PTHR31429 | PANTHER:PTHR31429:SF32 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EE0493 | InterPro:WRKY_dom |
| InterPro:WRKY_dom_sf | SEG:seg | : | : | : | : |
Description
BnaC01g06660D
Coordinates
chrLK031789:+:1266757..1268215
Molecular Weight (calculated)
35893.9 Da
IEP (calculated)
8.902
GRAVY (calculated)
-0.907
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCSSFLDIS LNLNTNTLDR SFPEKLPKKE VKVSTSADLK RKWMVKDESA SELREELNRV NSENKKLTEM LATVYENYCA LQHHLEKLQS RRQSPGTDQI
101: EQPTKKRKQD SDESLSLPNG LSSGRNENSS SNEAHHHHHH HHQKQQYEQK NQLISCKRSV TDSFNKAQVS TVYVPAVSSD TSFTVKDGYQ WRKYGQKVTR
201: DNPSPRAYFR CSFAPSCPVK KKVQRSAEDP SILVATYEGT HNHLGPNASE GDATSQVGSR TVTLDMVHGG HSLALEKNER ETMQDVLVQQ MASSLTKDSK
301: FTAALAAAIS GRLMEQSRT
101: EQPTKKRKQD SDESLSLPNG LSSGRNENSS SNEAHHHHHH HHQKQQYEQK NQLISCKRSV TDSFNKAQVS TVYVPAVSSD TSFTVKDGYQ WRKYGQKVTR
201: DNPSPRAYFR CSFAPSCPVK KKVQRSAEDP SILVATYEGT HNHLGPNASE GDATSQVGSR TVTLDMVHGG HSLALEKNER ETMQDVLVQQ MASSLTKDSK
301: FTAALAAAIS GRLMEQSRT
001: MDGSSFLDIS LDLNTNPFSA KLPKKEVSVL ASTHLKRKWL EQDESASELR EELNRVNSEN KKLTEMLARV CESYNELHNH LEKLQSRQSP EIEQTDIPIK
101: KRKQDPDEFL GFPIGLSSGK TENSSSNEDH HHHHQQHEQK NQLLSCKRPV TDSFNKAKVS TVYVPTETSD TSLTVKDGFQ WRKYGQKVTR DNPSPRAYFR
201: CSFAPSCPVK KKVQRSAEDP SLLVATYEGT HNHLGPNASE GDATSQGGSS TVTLDLVNGC HRLALEKNER DNTMQEVLIQ QMASSLTKDS KFTAALAAAI
301: SGRLMEQSRT
101: KRKQDPDEFL GFPIGLSSGK TENSSSNEDH HHHHQQHEQK NQLLSCKRPV TDSFNKAKVS TVYVPTETSD TSLTVKDGFQ WRKYGQKVTR DNPSPRAYFR
201: CSFAPSCPVK KKVQRSAEDP SLLVATYEGT HNHLGPNASE GDATSQGGSS TVTLDLVNGC HRLALEKNER DNTMQEVLIQ QMASSLTKDS KFTAALAAAI
301: SGRLMEQSRT
Arabidopsis Description
WRKY18WRKY like transcription factor [Source:UniProtKB/TrEMBL;Acc:Q0WTZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.