Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015515_P001 | Maize | nucleus | 74.77 | 69.16 |
| EES04642 | Sorghum | nucleus | 76.64 | 67.58 |
| TraesCS6D01G136200.1 | Wheat | nucleus | 70.72 | 65.23 |
| TraesCS6A01G146900.1 | Wheat | nucleus | 69.47 | 63.71 |
| Os02t0181300-01 | Rice | nucleus | 68.22 | 62.93 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 69.16 | 62.54 |
| HORVU6Hr1G028790.1 | Barley | nucleus | 67.6 | 61.47 |
| Zm00001d046805_P001 | Maize | nucleus | 56.7 | 51.85 |
| Zm00001d036726_P001 | Maize | nucleus | 55.45 | 51.74 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 42.68 | 48.93 |
| KRH61669 | Soybean | nucleus | 29.91 | 43.64 |
| Bra019123.1-P | Field mustard | nucleus | 25.86 | 42.78 |
| PGSC0003DMT400073710 | Potato | nucleus | 28.66 | 42.4 |
| Solyc12g042590.1.1 | Tomato | nucleus | 28.35 | 42.13 |
| Solyc08g067340.2.1 | Tomato | nucleus | 33.02 | 41.9 |
| PGSC0003DMT400019061 | Potato | nucleus | 32.4 | 41.11 |
| KRH23643 | Soybean | nucleus | 39.25 | 40.78 |
| KRH47344 | Soybean | nucleus | 38.63 | 39.87 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 38.63 | 39.87 |
| CDY22299 | Canola | nucleus | 35.83 | 39.66 |
| Bra008435.1-P | Field mustard | nucleus | 35.83 | 39.66 |
| KRH44560 | Soybean | nucleus | 38.63 | 39.62 |
| PGSC0003DMT400019058 | Potato | nucleus | 32.09 | 39.46 |
| CDY67287 | Canola | nucleus | 35.51 | 39.31 |
| CDX72327 | Canola | nucleus | 34.89 | 39.3 |
| Solyc08g067360.2.1 | Tomato | nucleus | 31.15 | 38.76 |
| KRH15674 | Soybean | nucleus | 33.96 | 38.65 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 38.01 | 38.49 |
| CDX75196 | Canola | nucleus | 33.33 | 37.81 |
| AT1G80840.1 | Thale cress | nucleus | 35.51 | 37.75 |
| Bra003588.1-P | Field mustard | nucleus | 34.89 | 37.71 |
| CDX67971 | Canola | nucleus | 34.89 | 37.71 |
| Bra035148.1-P | Field mustard | nucleus | 35.2 | 37.67 |
| CDX87347 | Canola | nucleus | 35.2 | 37.67 |
| AT2G25000.1 | Thale cress | nucleus | 31.78 | 37.64 |
| CDX88573 | Canola | nucleus | 35.2 | 37.54 |
| KRH09652 | Soybean | nucleus | 38.01 | 36.97 |
| CDX79347 | Canola | nucleus | 34.27 | 36.91 |
| Bra011299.1-P | Field mustard | nucleus | 35.51 | 35.96 |
| KRH05350 | Soybean | nucleus | 34.89 | 35.9 |
| CDY39879 | Canola | nucleus | 34.27 | 35.83 |
| AT4G31800.1 | Thale cress | nucleus | 34.58 | 35.81 |
| CDX68787 | Canola | nucleus | 35.51 | 35.74 |
| Bra010220.1-P | Field mustard | nucleus | 33.96 | 35.39 |
| Zm00001d020492_P001 | Maize | nucleus | 33.02 | 35.1 |
| KRH52329 | Soybean | nucleus | 33.02 | 34.3 |
| Solyc03g116890.2.1 | Tomato | nucleus | 36.76 | 33.71 |
| Zm00001d020495_P001 | Maize | nucleus | 27.73 | 33.46 |
| PGSC0003DMT400051047 | Potato | nucleus | 36.76 | 33.24 |
| Solyc06g068460.2.1 | Tomato | nucleus | 37.07 | 33.06 |
| PGSC0003DMT400073396 | Potato | nucleus | 36.76 | 32.78 |
| Bra023983.1-P | Field mustard | nucleus | 33.64 | 31.3 |
| CDY70096 | Canola | nucleus | 33.64 | 31.3 |
| Zm00001d005749_P001 | Maize | nucleus | 30.53 | 27.92 |
| Zm00001d011237_P001 | Maize | nucleus | 20.25 | 21.81 |
| Zm00001d045375_P001 | Maize | nucleus | 14.33 | 18.4 |
| Zm00001d024768_P001 | Maize | nucleus | 27.41 | 16.09 |
| Zm00001d008190_P001 | Maize | nucleus | 23.68 | 14.99 |
| Zm00001d040554_P001 | Maize | nucleus | 26.48 | 14.63 |
| Zm00001d039532_P001 | Maize | nucleus | 24.3 | 14.26 |
| Zm00001d039245_P001 | Maize | nucleus | 23.99 | 14.23 |
| Zm00001d008794_P001 | Maize | nucleus | 23.68 | 14.07 |
| Zm00001d018203_P001 | Maize | nucleus | 23.68 | 13.13 |
| Zm00001d009595_P001 | Maize | nucleus | 24.92 | 13.11 |
| Zm00001d039044_P001 | Maize | nucleus | 23.68 | 12.1 |
Protein Annotations
| EntrezGene:100281342 | MapMan:15.5.22 | Gene3D:2.20.25.80 | ProteinID:AQK60257.1 | UniProt:B6SUI2 | ncoils:Coil |
| EMBL:EU956397 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF9 |
| SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI000182AF00 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | EnsemblPlantsGene:Zm00001d053746 |
| EnsemblPlants:Zm00001d053746_P001 | EnsemblPlants:Zm00001d053746_T001 | SEG:seg | : | : | : |
Description
Probable WRKY transcription factor 40
Coordinates
chr4:+:240330758..240332367
Molecular Weight (calculated)
34542.9 Da
IEP (calculated)
8.791
GRAVY (calculated)
-0.498
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPWISSQPS LSLDLRVGLP PLSLHQAPVA VALARPKVLV EENFLLPPKK EPEVAAALES ELRRMSEENR RLAEALAAVV SKYEALRSQH TEMVAASSAS
101: EGGSVSPSRK RKSESADTAP VQRLHQQHAA ADLSECTSGG EPPCKRVVRD RAEEVEEEEE CRPRVSKLYV RADPADLSLA VRDGYQWRKY GQKVTKDNPC
201: PRAYFRCSFA PACPVKKKVQ RSAHDASVLV ATYEGDHTHG PPPSGSGSGS GASSKNAAKP PSPPRRQEAA VAVTAAAAAS EMVRRNLAEQ MAVTLARDPS
301: FKAALVSALS GRILELSPTK D
101: EGGSVSPSRK RKSESADTAP VQRLHQQHAA ADLSECTSGG EPPCKRVVRD RAEEVEEEEE CRPRVSKLYV RADPADLSLA VRDGYQWRKY GQKVTKDNPC
201: PRAYFRCSFA PACPVKKKVQ RSAHDASVLV ATYEGDHTHG PPPSGSGSGS GASSKNAAKP PSPPRRQEAA VAVTAAAAAS EMVRRNLAEQ MAVTLARDPS
301: FKAALVSALS GRILELSPTK D
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.