Factsheet for Zm00001d044682_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014076_P001
Zm00001d016381_P001
Zm00001d018346_P001
Zm00001d039202_P001
Zm00001d046388_P001
Zm00001d053595_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01900.1	Zm00001d014076_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d016381_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d018346_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d039202_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d046388_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d053595_P004	AT4G38130.1	18776063
AT5G22570.1	Zm00001d014076_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d016381_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d018346_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d039202_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d046388_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d053595_P004	AT4G38130.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0116600-01	Rice	nucleus	35.83	39.39
Zm00001d023336_P001	Maize	nucleus	42.52	37.76
Os11t0117400-00	Rice	nucleus	36.61	34.32
Zm00001d052358_P001	Maize	nucleus	34.65	28.85
AT1G80590.1	Thale cress	nucleus	17.72	19.15
CDY04820	Canola	nucleus	18.5	18.01
CDY37613	Canola	nucleus	13.78	17.68
CDY37614	Canola	nucleus	13.78	17.68
Bra008454.1-P	Field mustard	nucleus	13.78	17.68
Bra023211.1-P	Field mustard	nucleus	17.72	17.44
CDY12284	Canola	nucleus	17.32	17.05
CDY63078	Canola	nucleus	17.32	17.05
Bra008459.1-P	Field mustard	nucleus	16.93	16.67
CDY38684	Canola	nucleus	16.93	16.67
Zm00001d005056_P001	Maize	nucleus	19.68	16.61
AT5G01900.1	Thale cress	nucleus	16.93	16.35
CDY71652	Canola	nucleus	16.54	16.28
AT1G66600.1	Thale cress	nucleus	15.35	16.18
CDY09147	Canola	nucleus	17.72	16.13
CDY35701	Canola	nucleus	17.32	15.44
Bra020197.1-P	Field mustard	nucleus	16.93	15.36
AT1G66560.1	Thale cress	nucleus	14.96	15.26
Bra028918.1-P	Field mustard	nucleus	17.32	15.17
AT1G66550.1	Thale cress	nucleus	14.96	14.96
Zm00001d023332_P001	Maize	nucleus	18.9	14.81
AT5G22570.1	Thale cress	nucleus	16.54	14.53
CDY37611	Canola	nucleus	14.17	14.52
Bra008456.1-P	Field mustard	nucleus	14.17	14.52
CDY71866	Canola	nucleus	15.75	14.08
Bra020196.1-P	Field mustard	nucleus	15.75	14.08
Zm00001d044680_P001	Maize	nucleus	18.9	13.3
Bra002421.1-P	Field mustard	nucleus	14.96	13.19
CDY26943	Canola	nucleus	14.57	12.85
CDY35694	Canola	nucleus	14.57	12.13

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A1D6NQP6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	ProteinID:ONM42251.1	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF31	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000843D3F8
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	EnsemblPlantsGene:Zm00001d044682	EnsemblPlants:Zm00001d044682_P001	EnsemblPlants:Zm00001d044682_T001	SEG:seg

Description

WRKY-transcription factor 4Probable WRKY transcription factor 38

Coordinates

chr3:+:234788638..234791964

Molecular Weight (calculated)

28315.3 Da

IEP (calculated)

6.337

GRAVY (calculated)

-0.404

Length

254 amino acids

Sequence
(BLAST)

001: MFSSSSKIFP APQARSSPSS SSLLTITVRN SRPVKLSKTE EKQVWLEIAV PSLRKNAQHT GSVVTQAPHF DGYQWRKYRQ KCISKAKHSR YPCILILICS
101: CLPRNYYRCA NSKDQGCPAT KTVQQKETDG SGAVKLFDVD YYGQHTCNKD GVIHPYVVDT AHDSVPTVDH NQSCSTPTSS AHNNGVHGIL QDDESFENLF
201: MVPSIPEHLT DESFENLVMV SSIPEYYLAD FTDVEMAEGA LEVASMMISE DIWA

Best Arabidopsis Sequence Match ( AT2G40750.1 )
(BLAST)

001: MDSNSNNTKS IKRKVVDQLV EGYEFATQLQ LLLSHQHSNQ YHIDETRLVS GSGSVSGGPD PVDELMSKIL GSFHKTISVL DSFDPVAVSV PIAVEGSWNA
101: SCGDDSATPV SCNGGDSGES KKKRLGVGKG KRGCYTRKTR SHTRIVEAKS SEDRYAWRKY GQKEILNTTF PRSYFRCTHK PTQGCKATKQ VQKQDQDSEM
201: FQITYIGYHT CTANDQTHAK TEPFDQEIIM DSEKTLAAST AQNHVNAMVQ EQENNTSSVT AIDAGMVKEE QNNNGDQSKD YYEGSSTGED LSLVWQETMM
301: FDDHQNHYYC GETSTTSHQF GFIDNDDQFS SFFDSYCADY ERTSAM

Arabidopsis Description

WRKY54Probable WRKY transcription factor 54 [Source:UniProtKB/Swiss-Prot;Acc:Q93WU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.