Factsheet for Zm00001d052358_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014076_P001
Zm00001d016381_P001
Zm00001d018346_P001
Zm00001d039202_P001
Zm00001d046388_P001
Zm00001d053595_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01900.1	Zm00001d014076_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d016381_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d018346_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d039202_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d046388_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d053595_P004	AT4G38130.1	18776063
AT5G22570.1	Zm00001d014076_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d016381_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d018346_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d039202_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d046388_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d053595_P004	AT4G38130.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023336_P001	Maize	nucleus	43.61	46.5
Os11t0117400-00	Rice	nucleus	36.07	40.59
Os12t0116600-01	Rice	nucleus	30.16	39.83
Zm00001d044682_P001	Maize	plastid	28.85	34.65
Zm00001d005056_P001	Maize	nucleus	22.62	22.92
CDY37613	Canola	nucleus	13.11	20.2
CDY37614	Canola	nucleus	13.11	20.2
AT5G01900.1	Thale cress	nucleus	17.38	20.15
Bra008454.1-P	Field mustard	nucleus	12.79	19.7
CDY04820	Canola	nucleus	16.72	19.54
CDY63078	Canola	nucleus	16.07	18.99
AT1G66600.1	Thale cress	nucleus	14.75	18.67
AT1G80590.1	Thale cress	nucleus	14.1	18.3
Bra023211.1-P	Field mustard	nucleus	15.41	18.22
CDY12284	Canola	nucleus	15.41	18.22
CDY38684	Canola	nucleus	14.75	17.44
AT1G66550.1	Thale cress	nucleus	14.43	17.32
Bra008459.1-P	Field mustard	nucleus	14.43	17.05
CDY71652	Canola	nucleus	14.43	17.05
Bra002421.1-P	Field mustard	nucleus	16.07	17.01
CDY35701	Canola	nucleus	15.74	16.84
AT1G66560.1	Thale cress	nucleus	13.44	16.47
Bra020197.1-P	Field mustard	nucleus	15.08	16.43
CDY26943	Canola	nucleus	15.41	16.32
Bra028918.1-P	Field mustard	nucleus	15.41	16.21
CDY09147	Canola	nucleus	14.75	16.13
Zm00001d023332_P001	Maize	nucleus	17.05	16.05
AT5G22570.1	Thale cress	nucleus	14.1	14.88
CDY37611	Canola	nucleus	11.8	14.52
Bra008456.1-P	Field mustard	nucleus	11.8	14.52
CDY71866	Canola	nucleus	13.44	14.44
Bra020196.1-P	Field mustard	nucleus	13.44	14.44
Zm00001d044680_P001	Maize	nucleus	15.74	13.3
CDY35694	Canola	nucleus	12.13	12.13

Protein Annotations

Gene3D:2.20.25.80	MapMan:35.2	ProteinID:AQK57040.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K7U6F3	PFAM:PF03106
PANTHER:PTHR31282	PANTHER:PTHR31282:SF31	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000220DEB6	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	EnsemblPlantsGene:Zm00001d052358	EnsemblPlants:Zm00001d052358_P001	EnsemblPlants:Zm00001d052358_T001	SEG:seg	:

Description

WRKY-transcription factor 76Putative WRKY DNA-binding domain superfamily protein

Coordinates

chr4:-:188123494..188124602

Molecular Weight (calculated)

33984.2 Da

IEP (calculated)

7.040

GRAVY (calculated)

-0.568

Length

305 amino acids

Sequence
(BLAST)

001: MNILESSDLG GYKEVKVMDE IEHQRALMVD LHDLVLPILD PCSGQAKLVQ QLFEEVFSCS GKIISSLQPG RNDREKQAIL IKCKRKGCMG NVENNRVSEE
101: NDGGGGKGRG NRRRKNAKHV VSSVVTQAPN FDGYQWRKYG QKWISKAKHS RYDPNNAKKR GLMHEVIMSN RSYYRCAYSK ELGCPATKTV QQKEGGGNYG
201: TVRLFDVDYY GQHICNSHGR IVHPNVVVDE PATHDDGGVP IVNQSSSSST SYAHGVQDES FGDLFMVPDM PEYLTELTDV EMANAFGFTA SMNSPLLVSE
301: DILWA

Best Arabidopsis Sequence Match ( AT5G01900.1 )
(BLAST)

001: MNSCQQKAME KLLHGHGCAN QLLIMDQTES DSSMEREDLA KSVLHCFSDA LSILIDTNDH QDDQSNNSSP QDSSPVLESS RKPLHKRGRK TSMAESSDYH
101: RHESSTPIYH DGFLWRKYGQ KQIKESEYQR SYYKCAYTKD QNCEAKKQVQ KIQHNPPLYS TTYFGQHICQ LHQAYATFPI DTSDFEEHEG SHMIRFGHPN
201: ISFSSSTSNL RQHQNHQDRI KDEYMKPVIA EDWSPSQWMS SEVALAVEAF EFNPFWTSHD LSS

Arabidopsis Description

WRKY62WRKY62 [Source:UniProtKB/TrEMBL;Acc:A0A178U8T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.