Factsheet for Zm00001d005056_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014076_P001
Zm00001d016381_P001
Zm00001d018346_P001
Zm00001d039202_P001
Zm00001d046388_P001
Zm00001d053595_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01900.1	Zm00001d014076_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d016381_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d018346_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d039202_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d046388_P001	AT4G38130.1	18776063
AT5G01900.1	Zm00001d053595_P004	AT4G38130.1	18776063
AT5G22570.1	Zm00001d014076_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d016381_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d018346_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d039202_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d046388_P001	AT4G38130.1	18776063
AT5G22570.1	Zm00001d053595_P004	AT4G38130.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G098280.1	Barley	nucleus	9.97	66.67
EES09141	Sorghum	nucleus	46.84	51.84
HORVU2Hr1G003310.1	Barley	nucleus	11.63	47.95
TraesCS2A01G021400.1	Wheat	nucleus	20.27	44.85
TraesCS5B01G145400.1	Wheat	nucleus	36.54	41.83
TraesCS2D01G051000.1	Wheat	nucleus	34.22	41.7
TraesCS2A01G052100.1	Wheat	nucleus	34.55	40.94
TraesCS2A01G019300.1	Wheat	nucleus	32.56	39.04
TraesCS5D01G145700.1	Wheat	nucleus	31.56	35.98
TraesCS5A01G146600.1	Wheat	nucleus	31.89	35.82
Zm00001d052358_P001	Maize	nucleus	22.92	22.62
Zm00001d023336_P001	Maize	nucleus	21.26	22.38
TraesCS2D01G051500.1	Wheat	cytosol	13.62	21.24
CDY04820	Canola	nucleus	17.94	20.69
AT1G80590.1	Thale cress	nucleus	15.95	20.43
CDY63078	Canola	nucleus	17.28	20.16
Zm00001d044682_P001	Maize	plastid	16.61	19.68
Bra023211.1-P	Field mustard	nucleus	16.61	19.38
CDY12284	Canola	nucleus	16.61	19.38
AT1G66550.1	Thale cress	nucleus	16.28	19.29
CDY38684	Canola	nucleus	16.28	18.99
AT5G01900.1	Thale cress	nucleus	16.28	18.63
Bra028918.1-P	Field mustard	nucleus	17.61	18.28
AT1G66600.1	Thale cress	nucleus	14.62	18.26
Bra008459.1-P	Field mustard	nucleus	15.61	18.22
CDY71652	Canola	nucleus	15.61	18.22
CDY37613	Canola	nucleus	11.96	18.18
CDY37614	Canola	nucleus	11.96	18.18
Bra008454.1-P	Field mustard	nucleus	11.96	18.18
AT1G66560.1	Thale cress	nucleus	14.62	17.67
Zm00001d023332_P001	Maize	nucleus	18.94	17.59
AT5G22570.1	Thale cress	nucleus	16.61	17.3
CDY09147	Canola	nucleus	15.95	17.2
Bra020197.1-P	Field mustard	nucleus	15.95	17.14
CDY26943	Canola	nucleus	15.95	16.67
Bra002421.1-P	Field mustard	nucleus	15.61	16.32
CDY71866	Canola	nucleus	14.95	15.85
Bra020196.1-P	Field mustard	nucleus	14.95	15.85
Zm00001d044680_P001	Maize	nucleus	18.94	15.79
CDY37611	Canola	nucleus	12.96	15.73
Bra008456.1-P	Field mustard	nucleus	12.96	15.73
CDY35701	Canola	nucleus	14.62	15.44
CDY35694	Canola	nucleus	13.29	13.11

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A1D6EIZ8	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	ProteinID:ONM20071.1	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF25	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0008437EF4
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	EnsemblPlantsGene:Zm00001d005056	EnsemblPlants:Zm00001d005056_P001	EnsemblPlants:Zm00001d005056_T001	SEG:seg

Description

WRKY-transcription factor 9Probable WRKY transcription factor 38

Coordinates

chr2:+:156393219..156394669

Molecular Weight (calculated)

32598.2 Da

IEP (calculated)

6.077

GRAVY (calculated)

-0.523

Length

301 amino acids

Sequence
(BLAST)

001: MPPPPPPCGH GWEMMEAMRR QQELVMQLRA LVLPLLVHGA MDGGGGGAPS AADIAVQLFD DVIGCNIGVV STLEGCILST GGGGPSVESV DDKSLVMRNN
101: SAPASNNGEK AEKQARLAAN SKQLNSVVVG QKRRRNNDKR SRSLVTHVPH YDGHLWRKYG QKNINGRKHP RSYYRCAYRE RNCLATKTVE EQEPNADDGN
201: SSSSAMAGEE SPKYTVVYYG DHTCNDHIIH AVSTVQLPQL VASVDLGQGT EMDQTTATRA GGVQESDEAD HLDLPALLEV FDSSLVDWEA LYHSPNVATH
301: S

Best Arabidopsis Sequence Match ( AT5G22570.1 )
(BLAST)

001: MEMNSPHEKA VQAIRYGHSC AMRLKRRLNH PMADGGPLSS YDLAKSIVES FSNAISILSA KPETEDDQFS DLSSRDSSPP PQGSPSKKRK IDSTNSSENW
101: RDDSPDPIYY DGYLWRKYGQ KSIKKSNHQR SYYRCSYNKD HNCEARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI AGQDPLDDFK STQMIRFGKD
201: QDQEKESRSN GFSLSVKHEE DIIKEQAIDQ YREITSNDQD CQDVIEEYLS SPSGSYPPSS SSGSESADFN SDLLFDNPDS WDRYDQFYF

Arabidopsis Description

WRKY38Probable WRKY transcription factor 38 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWF1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.