Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G22570.1 | CDY21119 | AT4G38130.1 | 18776063 |
| AT5G22570.1 | CDY30008 | AT4G38130.1 | 18776063 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71866 | Canola | nucleus | 64.92 | 69.72 |
| CDY26943 | Canola | nucleus | 50.82 | 53.82 |
| CDY09147 | Canola | nucleus | 47.54 | 51.97 |
| CDY35701 | Canola | nucleus | 47.54 | 50.88 |
| AT5G22570.1 | Thale cress | nucleus | 42.3 | 44.64 |
| HORVU2Hr1G098280.1 | Barley | nucleus | 4.92 | 33.33 |
| CDY04820 | Canola | nucleus | 25.57 | 29.89 |
| CDY12284 | Canola | nucleus | 24.92 | 29.46 |
| CDY63078 | Canola | nucleus | 24.92 | 29.46 |
| CDY37611 | Canola | nucleus | 21.31 | 26.21 |
| CDY38684 | Canola | nucleus | 21.97 | 25.97 |
| CDY71652 | Canola | nucleus | 21.97 | 25.97 |
| CDY37614 | Canola | nucleus | 16.72 | 25.76 |
| CDY37613 | Canola | nucleus | 16.72 | 25.76 |
| HORVU2Hr1G003310.1 | Barley | nucleus | 5.9 | 24.66 |
| OQU78675 | Sorghum | nucleus | 13.77 | 19.53 |
| Os12t0116600-01 | Rice | nucleus | 14.1 | 18.61 |
| TraesCS2A01G021400.1 | Wheat | nucleus | 8.2 | 18.38 |
| Os11t0117400-00 | Rice | nucleus | 15.74 | 17.71 |
| EES09138 | Sorghum | nucleus | 16.39 | 17.3 |
| Os11t0117500-01 | Rice | nucleus | 18.03 | 17.19 |
| Os12t0116700-01 | Rice | nucleus | 17.7 | 16.82 |
| TraesCS5B01G145500.1 | Wheat | nucleus | 16.39 | 15.82 |
| TraesCS5D01G145600.1 | Wheat | nucleus | 16.39 | 15.82 |
| TraesCS5A01G146700.1 | Wheat | nucleus | 16.39 | 15.77 |
| TraesCS5A01G146600.1 | Wheat | nucleus | 13.77 | 15.67 |
| HORVU5Hr1G046430.1 | Barley | nucleus | 16.39 | 15.34 |
| TraesCS5B01G145400.1 | Wheat | nucleus | 13.11 | 15.21 |
| TraesCS5D01G145700.1 | Wheat | nucleus | 13.11 | 15.15 |
| TraesCS2D01G051000.1 | Wheat | nucleus | 12.13 | 14.98 |
| TraesCS2A01G052100.1 | Wheat | nucleus | 12.46 | 14.96 |
| EES16607 | Sorghum | nucleus | 12.79 | 14.61 |
| Zm00001d044682_P001 | Maize | plastid | 12.13 | 14.57 |
| EES09137 | Sorghum | nucleus | 12.79 | 14.39 |
| TraesCS2A01G019300.1 | Wheat | nucleus | 11.8 | 14.34 |
| Zm00001d005056_P001 | Maize | nucleus | 13.11 | 13.29 |
| Zm00001d023332_P001 | Maize | nucleus | 13.77 | 12.96 |
| EES09141 | Sorghum | nucleus | 11.48 | 12.87 |
| Zm00001d052358_P001 | Maize | nucleus | 12.13 | 12.13 |
| TraesCS5A01G146500.1 | Wheat | nucleus | 13.44 | 12.13 |
| Zm00001d023336_P001 | Maize | nucleus | 10.82 | 11.54 |
| TraesCS5B01G145300.1 | Wheat | nucleus | 12.46 | 11.28 |
| TraesCS5D01G145800.1 | Wheat | nucleus | 12.13 | 11.08 |
| Os11t0117600-00 | Rice | nucleus | 5.57 | 11.04 |
| Zm00001d044680_P001 | Maize | nucleus | 12.46 | 10.53 |
| EES15637 | Sorghum | nucleus | 11.48 | 10.26 |
| OQU78673 | Sorghum | nucleus | 7.87 | 10.21 |
| HORVU5Hr1G046390.2 | Barley | nucleus, plastid | 12.13 | 9.92 |
| TraesCS2D01G051500.1 | Wheat | cytosol | 6.23 | 9.84 |
Protein Annotations
| Gene3D:2.20.25.80 | MapMan:35.1 | GO:A0A078HE19 | UniProt:A0A078HE19 | EnsemblPlants:CDY35694 | ProteinID:CDY35694 |
| ProteinID:CDY35694.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00059103001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31282 |
| PANTHER:PTHR31282:SF37 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EF0676 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g09600DBnaC02g09600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HE19]
Coordinates
chrLK032358:-:181017..182479
Molecular Weight (calculated)
34176.8 Da
IEP (calculated)
7.866
GRAVY (calculated)
-0.724
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTSHEKAVQ AILYGHSCAK RLKLQLDHPV ADGRSVSNYD LAKSIVHCFS DAISIFSDKP KSKDDVFSDL SSRNYPPPLH QRSHSKKRKN NSTNSSENWR
101: HDSPDPNYYD GFLWRKYGQK TIKQSKHQSG STRGRVALLV HARDRFFSIA KLLAPHVATQ IWAHAYGLFE YPGEDLSVGC TSHPGIRSVS LIDPDYACGA
201: RKHEPTIKDN PPVYRTTYFG HHTCNINQNA GFTTIGDPVD NLENARIIRF GQDLDQETSC LSVSVKHEEG IIIEETMDHC RGITGNDKDC QTVINENHQS
301: SPSGS
101: HDSPDPNYYD GFLWRKYGQK TIKQSKHQSG STRGRVALLV HARDRFFSIA KLLAPHVATQ IWAHAYGLFE YPGEDLSVGC TSHPGIRSVS LIDPDYACGA
201: RKHEPTIKDN PPVYRTTYFG HHTCNINQNA GFTTIGDPVD NLENARIIRF GQDLDQETSC LSVSVKHEEG IIIEETMDHC RGITGNDKDC QTVINENHQS
301: SPSGS
001: MEMNSPHEKA VQAIRYGHSC AMRLKRRLNH PMADGGPLSS YDLAKSIVES FSNAISILSA KPETEDDQFS DLSSRDSSPP PQGSPSKKRK IDSTNSSENW
101: RDDSPDPIYY DGYLWRKYGQ KSIKKSNHQR SYYRCSYNKD HNCEARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI AGQDPLDDFK STQMIRFGKD
201: QDQEKESRSN GFSLSVKHEE DIIKEQAIDQ YREITSNDQD CQDVIEEYLS SPSGSYPPSS SSGSESADFN SDLLFDNPDS WDRYDQFYF
101: RDDSPDPIYY DGYLWRKYGQ KSIKKSNHQR SYYRCSYNKD HNCEARKHEQ KIKDNPPVYR TTYFGHHTCK TEHNLDAIFI AGQDPLDDFK STQMIRFGKD
201: QDQEKESRSN GFSLSVKHEE DIIKEQAIDQ YREITSNDQD CQDVIEEYLS SPSGSYPPSS SSGSESADFN SDLLFDNPDS WDRYDQFYF
Arabidopsis Description
WRKY38Probable WRKY transcription factor 38 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWF1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.