Factsheet for Os11t0117400-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

nucleus: 17960484

gfp PMID: 17960484 doi

H Wang, J Hao, X Chen, Z Hao, X Wang, Y Lou, Y Peng, Z Guo

Department of Plant Pathology, State Key Laboratory of Agrobiotechnology, China Agricultural University, Yuanmenyuan West Rd. 2, Beijing 100094, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0214900-01
Os02t0215200-02
Os06t0583400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01900.1	Os02t0214900-01	AT4G38130.1	18776063
AT5G01900.1	Os02t0215200-02	AT4G38130.1	18776063
AT5G01900.1	Os06t0583400-01	AT4G38130.1	18776063
AT5G22570.1	Os02t0214900-01	AT4G38130.1	18776063
AT5G22570.1	Os02t0215200-02	AT4G38130.1	18776063
AT5G22570.1	Os06t0583400-01	AT4G38130.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0116600-01	Rice	nucleus	84.13	98.7
EES16607	Sorghum	nucleus	46.13	46.82
Zm00001d023336_P001	Maize	nucleus	46.13	43.71
EES09137	Sorghum	nucleus	42.07	42.07
OQU78673	Sorghum	nucleus	34.32	39.57
Zm00001d044682_P001	Maize	plastid	34.32	36.61
Zm00001d052358_P001	Maize	nucleus	40.59	36.07
Os12t0116700-01	Rice	nucleus	29.52	24.92
Os11t0117500-01	Rice	nucleus	28.78	24.38
CDY37614	Canola	nucleus	15.5	21.21
CDY37613	Canola	nucleus	15.5	21.21
AT1G66600.1	Thale cress	nucleus	18.82	21.16
AT1G66560.1	Thale cress	nucleus	19.19	20.88
AT1G80590.1	Thale cress	nucleus	18.08	20.85
Bra008454.1-P	Field mustard	nucleus	15.13	20.71
Os11t0117600-00	Rice	nucleus	11.44	20.13
CDY04820	Canola	nucleus	18.45	19.16
CDY26943	Canola	nucleus	20.3	19.1
Bra002421.1-P	Field mustard	nucleus	19.56	18.4
CDY12284	Canola	nucleus	17.34	18.22
AT1G66550.1	Thale cress	nucleus	16.97	18.11
Bra023211.1-P	Field mustard	nucleus	16.97	17.83
CDY63078	Canola	nucleus	16.97	17.83
CDY71652	Canola	nucleus	15.87	16.67
Bra008459.1-P	Field mustard	nucleus	15.87	16.67
AT5G01900.1	Thale cress	nucleus	15.87	16.35
CDY38684	Canola	nucleus	15.5	16.28
CDY35701	Canola	nucleus	16.97	16.14
CDY71866	Canola	nucleus	16.61	15.85
Bra020196.1-P	Field mustard	nucleus	16.61	15.85
CDY35694	Canola	nucleus	17.71	15.74
Bra028918.1-P	Field mustard	nucleus	16.61	15.52
CDY09147	Canola	nucleus	15.5	15.05
Bra020197.1-P	Field mustard	nucleus	15.13	14.64
Bra008456.1-P	Field mustard	nucleus	13.28	14.52
CDY37611	Canola	nucleus	13.28	14.52
AT5G22570.1	Thale cress	nucleus	15.13	14.19

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A0P0XYP5	ProteinID:BAT12420.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EnsemblPlantsGene:Os11g0117400
EnsemblPlants:Os11t0117400-00	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31282	PANTHER:PTHR31282:SF31	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI000393A44B	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	:	:

Description

WRKY GENE 104Similar to WRKY DNA binding domain containing protein, expressed. (Os11t0117400-00)

Coordinates

chr11:-:782471..783485

Molecular Weight (calculated)

30620.0 Da

IEP (calculated)

6.140

GRAVY (calculated)

-0.699

Length

271 amino acids

Sequence
(BLAST)

001: SDCQVVINMI EHQKALMVEL RGMVMPLLPS DNEQAKLALQ LLGDILSCSD KAISMLELGG DTKKLTNLVG GKRKGDKHSM DNHNLEEEAK ESVSKRRKNA
101: EHTGSTVAQA PHNDGHQWRK YGQKWISRAK HSRSYYRCAN SKVQGCPATK TVQQMDSSGN GTSKLFNVDY YGQHTCRGDG IADPYVVDTA HHSMEPINQN
201: ECNSPTLEHE AHEVQDERFE NLCMVQNMPE YLIDFELERA FEFIVNSPLG SEHWTFDDSI RCEHSPICIW G

Best Arabidopsis Sequence Match ( AT2G46400.1 )
(BLAST)

001: MMMEEKLVIN ELELGKELAN RLMNNLKHTS SVDSNKTLIS DILRIYQNAI FMLSFNQDKN ILKRSLEIDG KDSKNVFKKR KVSEKNTEKV KVFVATEQEN
101: GSIDDGHCWR KYGQKEIHGS KNPRAYYRCT HRFTQDCLAV KQVQKSDTDP SLFEVKYLGN HTCNNITSPK TTTNFSVSLT NTNIFEGNRV HVTEQSEDMK
201: PTKSEEVMIS LEDLENKKNI FRTFSFSNHE IENGVWKSNL FLGNFVEDLS PATSGSAITS EVLSAPAAVE NSETADSYFS SLDNIIDFGQ DWLWS

Arabidopsis Description

WRKY46Probable WRKY transcription factor 46 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.