Factsheet for Os06t0583400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0122000-01
Os07t0679700-01	nucleus
Os11t0117400-00
Os11t0117500-01
Os11t0117600-00
Os12t0116600-01
Os12t0116700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38130.1	Os02t0122000-01	AT2G45640.1	16429262
AT4G38130.1	Os07t0679700-01	AT4G32010.1	23362207
AT4G38130.1	Os07t0679700-01	AT4G32010.1	23362207
AT4G38130.1	Os11t0117400-00	AT5G01900.1	18776063
AT4G38130.1	Os11t0117500-01	AT5G01900.1	18776063
AT4G38130.1	Os11t0117600-00	AT5G01900.1	18776063
AT4G38130.1	Os12t0116600-01	AT5G01900.1	18776063
AT4G38130.1	Os12t0116700-01	AT5G01900.1	18776063
AT4G38130.1	Os11t0117400-00	AT5G22570.1	18776063
AT4G38130.1	Os11t0117500-01	AT5G22570.1	18776063
AT4G38130.1	Os11t0117600-00	AT5G22570.1	18776063
AT4G38130.1	Os12t0116600-01	AT5G22570.1	18776063
AT4G38130.1	Os12t0116700-01	AT5G22570.1	18776063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20269	Sorghum	nucleus	90.73	90.73
TraesCS7B01G261800.1	Wheat	nucleus	90.73	90.56
HORVU7Hr1G085870.2	Barley	nucleus	90.15	89.98
TraesCS7D01G356800.1	Wheat	nucleus	89.77	89.6
TraesCS7A01G365600.3	Wheat	nucleus	89.77	88.91
Zm00001d046388_P001	Maize	nucleus	86.1	83.99
VIT_14s0006g01820.t01	Wine grape	nucleus	77.61	80.08
VIT_03s0038g04240.t01	Wine grape	nucleus	77.61	80.08
Solyc09g091440.2.1	Tomato	nucleus	76.25	79.32
CDY30008	Canola	nucleus	75.87	78.29
GSMUA_Achr2P19590_001	Banana	nucleus	68.73	78.24
GSMUA_Achr5P06320_001	Banana	nucleus	70.08	78.23
Bra040131.1-P	Field mustard	nucleus	75.68	78.09
KRH27562	Soybean	nucleus	74.9	78.07
AT4G38130.1	Thale cress	nucleus	75.48	78.04
CDY21119	Canola	nucleus	75.48	77.89
KRH77972	Soybean	nucleus	74.71	77.87
KRH60609	Soybean	nucleus	73.75	76.86
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	75.48	76.82
KRH51318	Soybean	nucleus	73.17	76.26
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	74.32	75.49
GSMUA_AchrUn_...	Banana	cytosol	55.98	73.6
PGSC0003DMT400076252	Potato	nucleus	75.48	72.95
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	54.63	65.66
GSMUA_Achr1P14440_001	Banana	cytosol	51.16	63.7
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	53.86	60.92
Os11t0200000-01	Rice	cytosol	41.12	46.71
Os04t0409600-01	Rice	cytosol	15.44	42.55
Os06t0571100-01	Rice	plastid	18.15	26.7
Os05t0440250-01	Rice	cytosol, nucleus, plastid	16.41	21.68
Os05t0440300-01	Rice	cytosol, nucleus, plastid	13.9	18.23
Os12t0182700-01	Rice	mitochondrion	14.86	17.38
Os07t0602200-01	Rice	cytosol, nucleus, plastid	22.78	16.98
Os07t0164100-01	Rice	nucleus	17.57	14.61
Os05t0440100-02	Rice	cytosol	2.12	4.01
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.4.1	Gene3D:3.40.800.20	EntrezGene:4341387	EMBL:AF513382	EMBL:AK068051
EMBL:AK068682	ProteinID:BAD68730.1	ProteinID:BAD68731.1	ProteinID:BAF19857.1	ProteinID:BAS98377.1	ProteinID:BAS98378.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932
InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	EnsemblPlantsGene:Os06g0583400
EnsemblPlants:Os06t0583400-01	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625
PANTHER:PTHR10625:SF127	UniProt:Q7Y0Y8	SUPFAM:SSF52768	UniParc:UPI00001A305A	InterPro:Ureohydrolase_dom_sf	RefSeq:XP_015643781.1
SEG:seg	:	:	:	:	:

Description

CLASS-1 TYPE HISTONE DEACETYLASE 1Class-I type histone deacetylase, Seedling root growth (Os06t0583400-01);Similar to Histone deacetylase. (Os06t0583400-02)

Coordinates

chr6:-:22794359..22800196

Molecular Weight (calculated)

57509.2 Da

IEP (calculated)

5.329

GRAVY (calculated)

-0.573

Length

518 amino acids

Sequence
(BLAST)

001: MDASAGGGGN SLPTAGADGA KRRVCYFYDA EVGNYYYGQG HPMKPHRIRM THALLAHYGL LDQMQVLKPH PARDRDLCRF HADDYVAFLR SVTPETQQDQ
101: IRALKRFNVG EDCPVFDGLY SFCQTYAGGS VGGAVKLNHG HDIAINWAGG LHHAKKCEAS GFCYVNDIVL AILELLKYHQ RVLYVDIDIH HGDGVEEAFY
201: TTDRVMTVSF HKFGDYFPGT GDIRDIGHSK GKYYSLNVPL DDGIDDESYQ SLFKPIMGKV MEVFRPGAVV LQCGADSLSG DRLGCFNLSI RGHAECVRFM
301: RSFNVPLLLL GGGGYTIRNV ARCWCYETGV ALGHELTDKM PPNEYFEYFG PDYTLHVAPS NMENKNTRQQ LDDIRSRLLD NLSKLRHAPS VQFQERPPEA
401: ELPEQDEDQE DPDERHHADS DVEMDDVKPL DDSGRRSSIQ NVRVKRESAE TDAADQDGNR VAAENTKGTE PAADGVGSSK QTVPTDASAM AIDEPGSLKV
501: EPDNSNKLQD QPSVHQKT

Best Arabidopsis Sequence Match ( AT4G38130.1 )
(BLAST)

001: MDTGGNSLAS GPDGVKRKVC YFYDPEVGNY YYGQGHPMKP HRIRMTHALL AHYGLLQHMQ VLKPFPARDR DLCRFHADDY VSFLRSITPE TQQDQIRQLK
101: RFNVGEDCPV FDGLYSFCQT YAGGSVGGSV KLNHGLCDIA INWAGGLHHA KKCEASGFCY VNDIVLAILE LLKQHERVLY VDIDIHHGDG VEEAFYATDR
201: VMTVSFHKFG DYFPGTGHIQ DIGYGSGKYY SLNVPLDDGI DDESYHLLFK PIMGKVMEIF RPGAVVLQCG ADSLSGDRLG CFNLSIKGHA ECVKFMRSFN
301: VPLLLLGGGG YTIRNVARCW CYETGVALGV EVEDKMPEHE YYEYFGPDYT LHVAPSNMEN KNSRQMLEEI RNDLLHNLSK LQHAPSVPFQ ERPPDTETPE
401: VDEDQEDGDK RWDPDSDMDV DDDRKPIPSR VKREAVEPDT KDKDGLKGIM ERGKGCEVEV DESGSTKVTG VNPVGVEEAS VKMEEEGTNK GGAEQAFPPK
501: T

Arabidopsis Description

HDA19Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.