Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G072570.5 | Barley | plastid | 72.34 | 48.4 |
| TraesCS2B01G309700.1 | Wheat | cytosol | 73.4 | 32.09 |
| TraesCS2A01G293200.1 | Wheat | cytosol | 72.87 | 31.86 |
| TraesCS2D01G291000.1 | Wheat | cytosol | 72.87 | 31.86 |
| EES10729 | Sorghum | cytosol | 71.81 | 31.4 |
| PGSC0003DMT400068240 | Potato | cytosol | 64.36 | 30.48 |
| VIT_15s0021g00610.t01 | Wine grape | cytosol | 68.09 | 29.77 |
| KRH25183 | Soybean | cytosol | 67.55 | 29.6 |
| VIT_06s0061g01510.t01 | Wine grape | cytosol, mitochondrion, nucleus | 67.55 | 29.53 |
| KRH30495 | Soybean | cytosol | 66.49 | 29.14 |
| Solyc11g067020.1.1 | Tomato | cytosol | 64.89 | 28.37 |
| Zm00001d003813_P001 | Maize | cytosol | 64.89 | 27.29 |
| AT3G44680.1 | Thale cress | cytosol | 60.64 | 26.76 |
| CDX99186 | Canola | cytosol | 59.57 | 26.29 |
| Bra019424.1-P | Field mustard | cytosol | 59.57 | 26.29 |
| GSMUA_Achr6P17260_001 | Banana | plastid | 65.96 | 25.83 |
| CDY08684 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 48.94 | 22.94 |
| Os02t0215200-02 | Rice | cytoskeleton, cytosol, nucleus | 43.62 | 16.11 |
| Os02t0214900-01 | Rice | cytoskeleton, cytosol, nucleus | 43.62 | 16.08 |
| Os08t0344100-01 | Rice | cytoskeleton, cytosol, nucleus | 38.83 | 15.94 |
| Os06t0583400-01 | Rice | nucleus | 42.55 | 15.44 |
| Os11t0200000-01 | Rice | cytosol | 29.79 | 12.28 |
| Os06t0571100-01 | Rice | plastid | 17.55 | 9.38 |
| Os05t0440250-01 | Rice | cytosol, nucleus, plastid | 14.36 | 6.89 |
| Os12t0182700-01 | Rice | mitochondrion | 11.7 | 4.97 |
| Os07t0602200-01 | Rice | cytosol, nucleus, plastid | 16.49 | 4.46 |
| Os05t0440300-01 | Rice | cytosol, nucleus, plastid | 7.98 | 3.8 |
| Os07t0164100-01 | Rice | nucleus | 12.23 | 3.69 |
| HORVU2Hr1G072600.1 | Barley | endoplasmic reticulum | 1.6 | 1.21 |
| Os07t0164300-01 | Rice | plasma membrane | 0.0 | 0.0 |
| AT3G44490.1 | Thale cress | cytosol | 0.0 | 0.0 |
| Os05t0440100-02 | Rice | cytosol | 0.0 | 0.0 |
| AT3G44660.1 | Thale cress | cytoskeleton, cytosol, nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.40.800.20 | MapMan:35.1 | UniProt:A0A0P0WA41 | ProteinID:BAS89102.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004407 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | InterPro:His_deacetylse | InterPro:His_deacetylse_1 |
| InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | EnsemblPlantsGene:Os04g0409600 | EnsemblPlants:Os04t0409600-01 | PFAM:PF00850 |
| PRINTS:PR01271 | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF141 | SUPFAM:SSF52768 | UniParc:UPI0003939F06 | InterPro:Ureohydrolase_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
Similar to Histone deacetylase. (Os04t0409600-01)
Coordinates
chr4:+:20250090..20255721
Molecular Weight (calculated)
19176.1 Da
IEP (calculated)
6.671
GRAVY (calculated)
-0.260
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEKDRIAYF YDGDVGNVYF GPNHPMKPHR LCMTHHLVLS YDLHKKMEIY RPHKAYPTEL AQFHSADYVE FLHRITPDTQ HLYENELRRY NLGEDCPVFD
101: NLFEFCQIYA GGTLDAARRL NHKTCDIAIN WAGGXXXXXX XXXXXXXXXX XXXXXXXELL NTMPGFSILI SMFITGMELK KPFISLTG
101: NLFEFCQIYA GGTLDAARRL NHKTCDIAIN WAGGXXXXXX XXXXXXXXXX XXXXXXXELL NTMPGFSILI SMFITGMELK KPFISLTG
001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS
Arabidopsis Description
HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.