Factsheet for VIT_06s0061g01510.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

cytosol 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g00610.t01	Wine grape	cytosol	96.98	96.98
KRH25183	Soybean	cytosol	91.63	91.84
KRH30495	Soybean	cytosol	91.4	91.61
Solyc11g067020.1.1	Tomato	cytosol	88.14	88.14
PGSC0003DMT400068240	Potato	cytosol	80.93	87.66
AT3G44680.1	Thale cress	cytosol	86.28	87.09
EES10729	Sorghum	cytosol	86.05	86.05
TraesCS2D01G291000.1	Wheat	cytosol	86.05	86.05
TraesCS2B01G309700.1	Wheat	cytosol	85.81	85.81
Bra019424.1-P	Field mustard	cytosol	84.88	85.68
CDX99186	Canola	cytosol	84.88	85.68
TraesCS2A01G293200.1	Wheat	cytosol	85.58	85.58
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	79.3	85.04
AT3G44490.1	Thale cress	cytosol	29.77	81.01
AT3G44660.1	Thale cress	cytoskeleton, cytosol, nucleus	26.74	80.99
Zm00001d003813_P001	Maize	cytosol	83.95	80.76
GSMUA_Achr6P17260_001	Banana	plastid	89.3	80.0
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	44.65	77.42
HORVU2Hr1G072570.5	Barley	plastid	45.12	69.04
Os04t0409600-01	Rice	cytosol	29.53	67.55
VIT_17s0000g09070.t01	Wine grape	cytosol	54.42	50.43
VIT_14s0006g01820.t01	Wine grape	nucleus	58.6	50.2
VIT_03s0038g04240.t01	Wine grape	nucleus	57.91	49.6
VIT_06s0080g00210.t01	Wine grape	nucleus	18.14	22.41
VIT_04s0008g00910.t01	Wine grape	plastid	17.91	21.45
VIT_04s0044g01510.t01	Wine grape	mitochondrion	16.05	15.79
VIT_17s0000g07280.t01	Wine grape	cytosol	20.7	13.78
VIT_17s0000g04120.t01	Wine grape	nucleus	19.77	12.2
VIT_13s0106g00170.t01	Wine grape	cytosol, golgi, plastid	9.07	11.57

Protein Annotations

EntrezGene:100248276	wikigene:100248276	MapMan:12.3.2.1.1	MapMan:12.3.2.1.4.1	Gene3D:3.40.800.20	EMBL:AM474004
ProteinID:CAN75079	ProteinID:CAN75079.1	ProteinID:CBI17064	ProteinID:CBI17064.3	UniProt:D7SN35	EMBL:FN594957
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872
GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
EntrezGene:LOC100248276	wikigene:LOC100248276	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271
PANTHER:PTHR10625	PANTHER:PTHR10625:SF171	SUPFAM:SSF52768	UniParc:UPI00015C97F2	InterPro:Ureohydrolase_dom_sf	ArrayExpress:VIT_06s0061g01510
EnsemblPlantsGene:VIT_06s0061g01510	EnsemblPlants:VIT_06s0061g01510.t01	RefSeq:XP_002270071	RefSeq:XP_002270071.2	RefSeq:XP_010651716.1	SEG:seg

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:D7SN35]

Coordinates

chr6:+:19410553..19425105

Molecular Weight (calculated)

49217.2 Da

IEP (calculated)

5.114

GRAVY (calculated)

-0.413

Length

430 amino acids

Sequence
(BLAST)

001: MRSKDRISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLVLS YELHKKMEIY RPHKAYPVEL AQFHSADYVE FLHRITPDTQ HLFLNELAKY NLGEDCPVFE
101: NLFEFCQIYA GGTIDAARRL NNQLCDIAIN WAGGLHHAKK CEASGFCYIN DLVLGILELL KHHARVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKYGDM
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DTSFTRLFKT IIAKVVEIYQ PGVIVLQCGA DSLAGDRLGC FNLSIDGHAE CVRIVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGVLLDTE LPNEIPENEY IKYFGPEHSL KIPNGHIENL NSKSYLGTIK QQVLENLRCI QHAPSVQMQE VPPDFYIPDF DEDEQNPDER
401: VDQHTKDKQI QRNDEYYEGD NDNDHNMDDV

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.