Factsheet for VIT_04s0008g00910.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05486	Soybean	cytosol	78.27	80.75
Solyc08g065350.2.1	Tomato	cytosol	77.99	80.69
PGSC0003DMT400076991	Potato	cytosol	76.88	77.97
Os06t0571100-01	Rice	plastid	73.54	75.0
Bra009877.1-P	Field mustard	cytosol	72.42	74.5
TraesCS7B01G266000.1	Wheat	plastid	71.31	72.52
TraesCS7D01G360500.1	Wheat	plastid	70.75	71.95
TraesCS7A01G362600.1	Wheat	plastid	71.03	71.83
KXG29820	Sorghum	cytosol	69.36	70.74
AT5G26040.2	Thale cress	endoplasmic reticulum	76.04	70.54
EER89968	Sorghum	plastid	68.52	70.29
CDX88212	Canola	cytosol, golgi, nucleus, plastid	72.98	66.0
Zm00001d046348_P003	Maize	plastid	69.36	65.35
GSMUA_Achr10P...	Banana	plastid	79.67	65.15
CDX80555	Canola	cytosol, golgi, nucleus, plastid	67.69	64.97
HORVU0Hr1G021730.1	Barley	cytosol	19.5	58.33
VIT_17s0000g09070.t01	Wine grape	cytosol	24.23	18.75
VIT_15s0021g00610.t01	Wine grape	cytosol	22.01	18.37
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	21.45	17.91
VIT_14s0006g01820.t01	Wine grape	nucleus	24.79	17.73
VIT_03s0038g04240.t01	Wine grape	nucleus	24.23	17.33
VIT_06s0080g00210.t01	Wine grape	nucleus	14.76	15.23
VIT_04s0044g01510.t01	Wine grape	mitochondrion	15.88	13.04
VIT_17s0000g07280.t01	Wine grape	cytosol	19.5	10.84
VIT_13s0106g00170.t01	Wine grape	cytosol, golgi, plastid	8.91	9.5
VIT_17s0000g04120.t01	Wine grape	nucleus	16.71	8.61

Protein Annotations

EntrezGene:100264550	wikigene:100264550	MapMan:12.3.2.1.3	Gene3D:3.40.800.20	ProteinID:CBI20632	ProteinID:CBI20632.3
UniProt:D7STN3	EMBL:FN595231	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787	InterPro:His_deacetylse
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	EntrezGene:LOC100264550	wikigene:LOC100264550	PFAM:PF00850
PRINTS:PR01270	PANTHER:PTHR43497	PANTHER:PTHR43497:SF2	SUPFAM:SSF52768	TIGR:TC70289	UniParc:UPI0001982ED0
InterPro:Ureohydrolase_dom_sf	ArrayExpress:VIT_04s0008g00910	EnsemblPlantsGene:VIT_04s0008g00910	EnsemblPlants:VIT_04s0008g00910.t01	unigene:Vvi.16858	RefSeq:XP_002277742
RefSeq:XP_002277742.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:781133..787349

Molecular Weight (calculated)

39524.7 Da

IEP (calculated)

8.122

GRAVY (calculated)

-0.046

Length

359 amino acids

Sequence
(BLAST)

001: MSTAPVNPAS VSSSTSASDA ETLRRGRILS SKLYFDVPLT KVPIIYSSSY DIAFLGMEKL HPFDSSKWGR ICRFLILDGA LEKNHIVEPL EASKDDLLVV
101: HSESYLNSLK TSLNVAVIIE VPPVALLPNC LVQQKVLYPF RKQVGGTILA AKLAKERGWA INVGGGFHHC SAGKGGGFCA YADISLCIHY AFIRLNISRV
201: MIIDLDAHQG NGHELDFSND RRVYILDMYN PGIYPSDFEA RRYIDQKVEV VSGTTTNEYL TKLDEALKVA GRMFDPELVV YNAGTDILDG DPLGRLKISP
301: EGVTSRDEKV FRFAREKKIP LIMLTSGGYM KSSAKVIADS IVNLSRKCLI DTGSSHSRG

Best Arabidopsis Sequence Match ( AT5G26040.2 )
(BLAST)

001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE

Arabidopsis Description

HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.