Factsheet for VIT_17s0000g09070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P06520_001	Banana	cytosol	64.66	82.42
KRH54336	Soybean	cytosol, nucleus, plastid	28.23	81.88
PGSC0003DMT400069419	Potato	nucleus	82.97	81.74
Solyc06g071680.2.1	Tomato	cytosol	82.33	81.1
KRH03236	Soybean	nucleus	81.9	80.51
KRH57122	Soybean	nucleus	82.33	80.25
KRH63609	Soybean	cytosol	78.45	78.28
GSMUA_AchrUn_...	Banana	mitochondrion	59.27	75.97
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	71.98	72.93
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	70.47	71.4
HORVU6Hr1G038010.6	Barley	cytosol	70.26	71.02
TraesCS6B01G210200.1	Wheat	cytosol	70.04	70.96
TraesCS6D01G168400.1	Wheat	cytosol	70.04	70.96
TraesCS6A01G181100.1	Wheat	cytosol	70.04	70.96
Zm00001d050139_P001	Maize	nucleus	71.77	67.82
KRH54335	Soybean	cytosol, nucleus, plastid	32.76	64.96
VIT_03s0038g04240.t01	Wine grape	nucleus	65.09	60.16
VIT_14s0006g01820.t01	Wine grape	nucleus	64.44	59.56
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	50.43	54.42
VIT_15s0021g00610.t01	Wine grape	cytosol	50.43	54.42
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	18.32	43.37
VIT_04s0008g00910.t01	Wine grape	plastid	18.75	24.23
VIT_06s0080g00210.t01	Wine grape	nucleus	16.81	22.41
VIT_04s0044g01510.t01	Wine grape	mitochondrion	16.59	17.62
VIT_17s0000g07280.t01	Wine grape	cytosol	21.34	15.33
VIT_17s0000g04120.t01	Wine grape	nucleus	18.97	12.63
VIT_13s0106g00170.t01	Wine grape	cytosol, golgi, plastid	9.05	12.46

Protein Annotations

EntrezGene:100244903	wikigene:100244903	MapMan:12.3.2.1.1	Gene3D:3.40.800.20	ProteinID:CCB42948	ProteinID:CCB42948.1
UniProt:F6GSI3	EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	EntrezGene:LOC100244903	wikigene:LOC100244903	PFAM:PF00850	PIRSF:PIRSF037913
PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144	SUPFAM:SSF52768	TIGR:TC65359
UniParc:UPI0001985221	InterPro:Ureohydrolase_dom_sf	ArrayExpress:VIT_17s0000g09070	EnsemblPlantsGene:VIT_17s0000g09070	EnsemblPlants:VIT_17s0000g09070.t01	unigene:Vvi.12944
RefSeq:XP_002281317	RefSeq:XP_002281317.2	RefSeq:XP_010663108.1	:	:	:

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F6GSI3]

Coordinates

chr17:-:10614563..10630685

Molecular Weight (calculated)

52242.8 Da

IEP (calculated)

6.144

GRAVY (calculated)

-0.491

Length

464 amino acids

Sequence
(BLAST)

001: MEDGIGGASL PSGPDAKKRR VCYFYEPTIG DYYYGQGHPM KPHRIRMAHN LVVHYALHRR MEINRPFPAG PDDIRRFHSD DYVDFLASVT PDSLHDHAHS
101: RYLKRFNVGE DCPVFDGLFG FCQASAGGSI GAAVKLNRRD ADIALNWAGG LHHAKKSEAS GFCYVNDIVL GILELLKVHR RVLYVDIDIH HGDGVEEAFF
201: TTDRVMTVSF HKFGDFFPGT GHIRDIGVGP GKYYALNVPL NDGMDDESFR GLFRPIIQKV MAVYQPDAVV LQCGADSLSG DRLGCFNLSV NGHADCLRFL
301: RSFNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYYEYFG PDYTLHIEPC NMENQNSPKD LEKIRNMLLE QLSRLPHAPS VPFQTTPPIT
401: KVPEEEEEDM DKRPKPRIWN GEDCESDPDE DEKPRAQFSN TNHHPTSNVE MRGVTGKIKE EKTT

Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)

001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S

Arabidopsis Description

HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.