Factsheet for GSMUA_AchrUn_randomP24890_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 2
cytosol 1
mitochondrion 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P23850_001
GSMUA_Achr5P26930_001
GSMUA_Achr5P28930_001
GSMUA_Achr6P33630_001
GSMUA_Achr8P02350_001
GSMUA_Achr9P03690_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	GSMUA_Achr5P28930_001	AT2G39940.1	12445118
AT5G63110.1	GSMUA_Achr6P33630_001	AT2G39940.1	12445118
AT5G63110.1	GSMUA_Achr8P02350_001	AT2G39940.1	12445118
AT5G63110.1	GSMUA_Achr9P03690_001	AT2G39940.1	12445118
AT5G63110.1	GSMUA_Achr3P23850_001	AT3G62980.1	12445118
AT5G63110.1	GSMUA_Achr5P26930_001	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P06520_001	Banana	cytosol	80.39	79.95
KRH54336	Soybean	cytosol, nucleus, plastid	32.87	74.38
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	75.97	60.04
TraesCS6D01G168400.1	Wheat	cytosol	75.14	59.39
TraesCS6A01G181100.1	Wheat	cytosol	75.14	59.39
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	75.14	59.39
VIT_17s0000g09070.t01	Wine grape	cytosol	75.97	59.27
TraesCS6B01G210200.1	Wheat	cytosol	74.86	59.17
HORVU6Hr1G038010.6	Barley	cytosol	74.59	58.82
KRH63609	Soybean	cytosol	73.48	57.2
PGSC0003DMT400069419	Potato	nucleus	73.48	56.48
Solyc06g071680.2.1	Tomato	cytosol	72.93	56.05
AT5G63110.1	Thale cress	nucleus	72.93	56.05
CDY16736	Canola	nucleus	72.65	55.96
Bra035858.1-P	Field mustard	nucleus	72.65	55.96
CDY48127	Canola	nucleus	72.38	55.74
KRH03236	Soybean	nucleus	72.65	55.72
Zm00001d050139_P001	Maize	nucleus	75.41	55.6
KRH57122	Soybean	nucleus	72.65	55.25
Solyc03g112410.1.1	Tomato	cytosol	68.51	55.23
PGSC0003DMT400046818	Potato	cytosol	69.34	55.04
GSMUA_AchrUn_...	Banana	cytosol	56.63	52.03
CDX84385	Canola	cytosol	72.38	51.88
GSMUA_Achr8P04190_001	Banana	cytosol, nucleus, plasma membrane	59.67	50.12
GSMUA_Achr1P14440_001	Banana	cytosol	54.14	47.12
GSMUA_Achr2P19590_001	Banana	nucleus	58.84	46.81
CDY41500	Canola	cytosol	72.38	45.96
GSMUA_Achr5P06320_001	Banana	nucleus	58.84	45.91
Bra038607.1-P	Field mustard	cytosol	71.55	45.44
GSMUA_Achr6P17260_001	Banana	plastid	54.14	40.83
KRH54335	Soybean	cytosol, nucleus, plastid	25.41	39.32
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	13.81	25.51
GSMUA_Achr7P09060_001	Banana	mitochondrion	3.04	21.15
GSMUA_Achr6P19520_001	Banana	cytosol	19.61	18.39
GSMUA_Achr10P...	Banana	plastid	19.61	16.17
GSMUA_Achr7P09050_001	Banana	cytosol	11.88	15.3
GSMUA_AchrUn_...	Banana	cytosol	17.68	14.45
GSMUA_Achr4P03250_001	Banana	cytosol	22.93	12.5
GSMUA_Achr8P20260_001	Banana	nucleus	19.61	11.22

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_AchrUn_randomG24890_001	EnsemblPlants:GSMUA_AchrUn_randomP24890_001	EnsemblPlants:GSMUA_AchrUn_randomT24890_001
InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	UniProt:M0UC47
PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144	SUPFAM:SSF52768
UniParc:UPI000296D2A8	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:

Description

Histone deacetylase 6 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG24890_001]

Coordinates

chrchrUn_random:+:123751358..123756229

Molecular Weight (calculated)

41052.6 Da

IEP (calculated)

5.030

GRAVY (calculated)

-0.396

Length

362 amino acids

Sequence
(BLAST)

001: MKPHRIRMAH NLIIHYRLHR LMERFNLDYD CPIFEGLFQF CQASAGGSIG AAVKINRGDA DIAINWAGGL HHAKKCGASG FCYVNDIVLG IIELLKFHRR
101: VLYVDIDIHH GDGVEEAFLT SDRVMTVSFH KYAEGNYFPG TGNIKDVGFG QGMYYALNVP LNDGMDDENF RGLFRPIIQK VMEIYQPDVV VLQCGADSLA
201: GDRLGSFNLS VKGHADCLQY LRSFNVPMMV LGGGGYTMCN VARCWCYETA VAVGVEPDNK LPYNDYYEYF GPDYNLHFQP RTVENKNFPK ELENIRNMLM
301: DHLSHIEHAP SVQFQARPPG TEAPEEEDED MENRTQPKLW SGEYYDSDNL EDDKKPDPEN VA

Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)

001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S

Arabidopsis Description

HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.