CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96377
KRG97777
KRH14993
KRH31107
KRH31921
KRH68108
KRH71533
KRH73146

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	KRG97777	AT2G39940.1	12445118
AT5G63110.1	KRH14993	AT2G39940.1	12445118
AT5G63110.1	KRH31107	AT2G39940.1	12445118
AT5G63110.1	KRH73146	AT2G39940.1	12445118
AT5G63110.1	KRG96377	AT3G62980.1	12445118
AT5G63110.1	KRH31921	AT3G62980.1	12445118
AT5G63110.1	KRH68108	AT3G62980.1	12445118
AT5G63110.1	KRH71533	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63610	Soybean	cytosol	57.69	68.53
KRH63609	Soybean	cytosol	79.49	40.0
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	31.62	37.76
VIT_17s0000g09070.t01	Wine grape	cytosol	64.96	32.76
KRH03236	Soybean	nucleus	65.81	32.63
KRH57122	Soybean	nucleus	66.24	32.56
Solyc06g071680.2.1	Tomato	cytosol	65.38	32.48
PGSC0003DMT400069419	Potato	nucleus	64.96	32.27
Bra035858.1-P	Field mustard	nucleus	64.1	31.91
CDY48127	Canola	nucleus	64.1	31.91
CDY16736	Canola	nucleus	64.1	31.91
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	61.11	31.22
AT5G63110.1	Thale cress	nucleus	62.82	31.21
TraesCS6D01G168400.1	Wheat	cytosol	59.83	30.57
TraesCS6B01G210200.1	Wheat	cytosol	59.83	30.57
TraesCS6A01G181100.1	Wheat	cytosol	59.83	30.57
HORVU6Hr1G038010.6	Barley	cytosol	59.83	30.5
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	58.97	30.13
Solyc03g112410.1.1	Tomato	cytosol	57.27	29.84
CDX84385	Canola	cytosol	63.25	29.31
PGSC0003DMT400046818	Potato	cytosol	56.84	29.17
Zm00001d050139_P001	Maize	nucleus	60.68	28.92
GSMUA_Achr2P06520_001	Banana	cytosol	43.59	28.02
Bra038607.1-P	Field mustard	cytosol	63.25	25.96
CDY41500	Canola	cytosol	63.25	25.96
KRH60609	Soybean	nucleus	54.7	25.75
KRH51318	Soybean	nucleus	54.7	25.75
KRH77972	Soybean	nucleus	54.7	25.75
GSMUA_AchrUn_...	Banana	mitochondrion	39.32	25.41
KRH27562	Soybean	nucleus	53.85	25.35
KRH25183	Soybean	cytosol	45.3	24.71
KRH30495	Soybean	cytosol	44.87	24.48
KRH05486	Soybean	cytosol	21.79	14.66
KRH26679	Soybean	cytosol	14.53	8.92
KRH59585	Soybean	plastid	14.96	8.33
KRH56687	Soybean	nucleus	13.68	7.67
KRH54336	Soybean	cytosol, nucleus, plastid	5.13	7.5
KRH56821	Soybean	nucleus	19.23	6.86
KRH03123	Soybean	cytosol	18.38	6.55
KRH03799	Soybean	nucleus	13.68	5.89
KRH16462	Soybean	nucleus	1.71	5.13

Protein Annotations

Gene3D:3.40.800.20	MapMan:35.1	UniProt:A0A0R0JU82	EMBL:ACUP02003514	EnsemblPlantsGene:GLYMA_06G178700	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
EnsemblPlants:KRH54335	ProteinID:KRH54335	ProteinID:KRH54335.1	PFAM:PF00850	PRINTS:PR01271	PANTHER:PTHR10625
PANTHER:PTHR10625:SF144	SUPFAM:SSF52768	TMHMM:TMhelix	UniParc:UPI0006EE0934	InterPro:Ureohydrolase_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:15164202..15165086

Molecular Weight (calculated)

26739.1 Da

IEP (calculated)

8.766

GRAVY (calculated)

-0.128

Length

234 amino acids

Sequence
(BLAST)

001: MARGERAETV SGVPLPSVGT DAKKRRMTYF YEPCIGYYFY GQGHPMKPHR FRMAHNLIVH YGLHRRMQVN RPFPAAEADI GRFHSDDYVD FLSTVSPQIL
101: SQNSHSHYRQ LKRFNVGEDC PVFDGLFDFC RAFPGGSIGA AVRLNRGDAD IAINWAGGLH HAKKAEASGF CYVNDIVLGI LELLKVHSVF FFFLFFFLYL
201: FCLHRKPTTM WVFYFPLEDP KTAVESKATN SCFS

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.