CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30495	Soybean	cytosol	97.44	97.44
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	91.84	91.63
VIT_15s0021g00610.t01	Wine grape	cytosol	91.61	91.4
Solyc11g067020.1.1	Tomato	cytosol	88.34	88.14
PGSC0003DMT400068240	Potato	cytosol	81.12	87.66
AT3G44680.1	Thale cress	cytosol	85.55	86.15
EES10729	Sorghum	cytosol	85.78	85.58
TraesCS2D01G291000.1	Wheat	cytosol	84.85	84.65
TraesCS2B01G309700.1	Wheat	cytosol	84.85	84.65
TraesCS2A01G293200.1	Wheat	cytosol	84.85	84.65
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	78.55	84.04
Bra019424.1-P	Field mustard	cytosol	83.45	84.04
CDX99186	Canola	cytosol	83.45	84.04
AT3G44490.1	Thale cress	cytosol	29.84	81.01
AT3G44660.1	Thale cress	cytoskeleton, cytosol, nucleus	26.81	80.99
Zm00001d003813_P001	Maize	cytosol	83.45	80.09
GSMUA_Achr6P17260_001	Banana	plastid	86.95	77.71
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	43.36	75.0
HORVU2Hr1G072570.5	Barley	plastid	44.52	67.97
Os04t0409600-01	Rice	cytosol	29.6	67.55
KRH54336	Soybean	cytosol, nucleus, plastid	20.51	55.0
KRH60609	Soybean	nucleus	58.04	50.1
KRH77972	Soybean	nucleus	57.81	49.9
KRH57122	Soybean	nucleus	55.24	49.79
KRH03236	Soybean	nucleus	54.78	49.79
KRH51318	Soybean	nucleus	57.58	49.7
KRH27562	Soybean	nucleus	57.58	49.7
KRH63609	Soybean	cytosol	53.15	49.03
KRH54335	Soybean	cytosol, nucleus, plastid	24.71	45.3
KRH63610	Soybean	cytosol	20.51	44.67
KRH16462	Soybean	nucleus	6.99	38.46
KRH05486	Soybean	cytosol	17.95	22.13
KRH26679	Soybean	cytosol	18.88	21.26
KRH56687	Soybean	nucleus	20.28	20.86
KRH59585	Soybean	plastid	16.08	16.43
KRH03799	Soybean	nucleus	20.51	16.21
KRH56821	Soybean	nucleus	21.68	14.18
KRH03123	Soybean	cytosol	21.21	13.87

Protein Annotations

EntrezGene:100796727	MapMan:12.3.2.1.1	MapMan:12.3.2.1.4.1	Gene3D:3.40.800.20	UniProt:A0A0R0H2W2	EMBL:ACUP02007220
EnsemblPlantsGene:GLYMA_12G086700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351
GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	ProteinID:KRH25182.1	EnsemblPlants:KRH25183	ProteinID:KRH25183	ProteinID:KRH25183.1	PFAM:PF00850
PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF171	SUPFAM:SSF52768
UniParc:UPI0001890A9D	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:7008088..7015905

Molecular Weight (calculated)

48950.8 Da

IEP (calculated)

4.887

GRAVY (calculated)

-0.385

Length

429 amino acids

Sequence
(BLAST)

001: MRSKDRIAYF YDGDVGSVYF GAKHPMKPHR LCMTHHLVLS YDLHKKMEIY RPHKAYPVEL AQFHSADYVE FLNRITPDTQ HLFLNELTKY NLGEDCPVFD
101: NLFEFCQIYA GGTIDAARRL NNQLCDIAIN WAGGLHHAKK CEASGFCYIN DLVLGILELL KYHARVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKYGDS
201: FFPGTGDAKE IGEREGKFYA INVPLKDGID DSSFTRLFKT IISKVVETYQ PGAIVLQCGA DSLAGDRLGC FNLSIDGHAE CVSFVKRFNL PLLVTGGGGY
301: TKENVARCWT VETGVLLDTE LPNEIPQNDY IKYFAPEFSL KVPNGPIENL NSKSYLSTIK MQVLENLRCI QHAPSVQMQE VPPDFYIPEF DEDEQNPDER
401: IDQHTQDKHI QRDDEYYDGD NDNDQMNIS

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.