Factsheet for Zm00001d003813_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10729	Sorghum	cytosol	91.5	95.12
TraesCS2D01G291000.1	Wheat	cytosol	89.93	93.49
TraesCS2A01G293200.1	Wheat	cytosol	89.49	93.02
TraesCS2B01G309700.1	Wheat	cytosol	89.26	92.79
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	48.77	87.9
VIT_15s0021g00610.t01	Wine grape	cytosol	80.98	84.19
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	80.76	83.95
PGSC0003DMT400068240	Potato	cytosol	74.27	83.63
KRH25183	Soybean	cytosol	80.09	83.45
KRH30495	Soybean	cytosol	80.09	83.45
Solyc11g067020.1.1	Tomato	cytosol	79.87	83.02
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	72.48	80.8
AT3G44680.1	Thale cress	cytosol	76.51	80.28
CDX99186	Canola	cytosol	75.17	78.87
Bra019424.1-P	Field mustard	cytosol	75.17	78.87
GSMUA_Achr6P17260_001	Banana	plastid	83.0	77.29
AT3G44490.1	Thale cress	cytosol	26.85	75.95
AT3G44660.1	Thale cress	cytoskeleton, cytosol, nucleus	23.71	74.65
HORVU2Hr1G072570.5	Barley	plastid	42.95	68.33
Os04t0409600-01	Rice	cytosol	27.29	64.89
Zm00001d016381_P001	Maize	nucleus	52.57	57.6
Zm00001d053595_P004	Maize	nucleus	55.03	47.58
Zm00001d046388_P001	Maize	nucleus	55.7	46.89
Zm00001d050139_P001	Maize	nucleus	50.34	45.82
Zm00001d014076_P001	Maize	cytosol, mitochondrion, nucleus	7.38	34.02
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	14.54	33.16
Zm00001d018346_P001	Maize	mitochondrion	13.42	27.15
Zm00001d039202_P001	Maize	nucleus	9.62	25.9
Zm00001d042974_P001	Maize	mitochondrion	11.41	23.72
Zm00001d046348_P003	Maize	plastid	17.0	19.95
Zm00001d010152_P002	Maize	cytosol	16.11	12.79
Zm00001d010162_P002	Maize	cytosol	16.11	12.79
Zm00001d006780_P011	Maize	cytosol	20.13	12.78
Zm00001d018864_P002	Maize	nucleus	17.67	12.76

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.1.4.1	Gene3D:3.40.800.20	UniProt:A0A1D6EBQ1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	InterPro:His_deacetylse
InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	ProteinID:ONM17764.1	PFAM:PF00850
PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF171	SUPFAM:SSF52768
UniParc:UPI0008446691	InterPro:Ureohydrolase_dom_sf	EnsemblPlantsGene:Zm00001d003813	EnsemblPlants:Zm00001d003813_P001	EnsemblPlants:Zm00001d003813_T001	SEG:seg

Description

histone deacetylase histone deacetylase

Coordinates

chr2:-:60626145..60637075

Molecular Weight (calculated)

51194.6 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.342

Length

447 amino acids

Sequence
(BLAST)

001: MEHTGDVGNV YFGPNHPMKP HRLCMTHHLV LSYGLHQKME IYRPHKAYPI ELAQFHSADY VEFLHRITPD SQHLYASELT RYNLGEDCPV FDNLFEFCQI
101: YAGGTLDAAR RLNHKICDIA INWAGGLHHA KKCEASGFCY INDLVLGILE LLKYHARVLY IDIDVHHGDG VEEAFYFTDR VMTVSFHKYG DLFFPGTGDI
201: KDIGEREGKY YAINIPLKDG IDDTSFTRLF KTIIAKVVET YLPGAIVLQC GADSLARDRL GCFNLSIEGH AECVKFVKKF NIPLLVRDIT MWYFSLSGFN
301: SLTLKFSIIQ VTGGGGYTKE NVARCWAVET GVLLDTELPN EIPKNEYIEY FAPDYTLKVP NLNMDNLNSK TYLSSIKVQV MESLRYIQHA PGVQMQEVPP
401: DFYIPDFDED ELDPDERVDQ HTQDKQIHRD DEYYEGDNDN DHDDGTR

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.