Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 3
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G44490.1 | Thale cress | cytosol | 46.77 | 73.42 |
| AT3G44660.1 | Thale cress | cytoskeleton, cytosol, nucleus | 41.53 | 72.54 |
| TraesCS2D01G291000.1 | Wheat | cytosol | 93.15 | 53.72 |
| TraesCS2B01G309700.1 | Wheat | cytosol | 92.34 | 53.26 |
| TraesCS2A01G293200.1 | Wheat | cytosol | 92.34 | 53.26 |
| EES10729 | Sorghum | cytosol | 88.71 | 51.16 |
| Zm00001d003813_P001 | Maize | cytosol | 87.9 | 48.77 |
| VIT_06s0061g01510.t01 | Wine grape | cytosol, mitochondrion, nucleus | 77.42 | 44.65 |
| VIT_15s0021g00610.t01 | Wine grape | cytosol | 76.61 | 44.19 |
| Solyc11g067020.1.1 | Tomato | cytosol | 75.81 | 43.72 |
| CDY08684 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 70.56 | 43.64 |
| KRH25183 | Soybean | cytosol | 75.0 | 43.36 |
| KRH30495 | Soybean | cytosol | 74.6 | 43.12 |
| AT3G44680.1 | Thale cress | cytosol | 72.98 | 42.49 |
| Bra019424.1-P | Field mustard | cytosol | 72.58 | 42.25 |
| CDX99186 | Canola | cytosol | 72.58 | 42.25 |
| GSMUA_Achr6P17260_001 | Banana | plastid | 80.65 | 41.67 |
| PGSC0003DMT400068240 | Potato | cytosol | 66.13 | 41.31 |
| HORVU6Hr1G038710.1 | Barley | cytosol | 52.82 | 25.29 |
| HORVU7Hr1G085870.2 | Barley | nucleus | 51.61 | 24.66 |
| HORVU6Hr1G038010.6 | Barley | cytosol | 42.34 | 22.88 |
| HORVU4Hr1G044060.1 | Barley | cytosol | 32.26 | 19.7 |
| HORVU5Hr1G077800.1 | Barley | cytosol | 34.68 | 17.77 |
| HORVU5Hr1G077760.1 | Barley | cytosol | 34.68 | 17.44 |
| HORVU1Hr1G074110.1 | Barley | cytosol | 15.32 | 9.77 |
| HORVU1Hr1G066760.1 | Barley | plastid | 16.13 | 9.13 |
| HORVU0Hr1G021740.4 | Barley | cytosol | 2.42 | 7.79 |
| HORVU5Hr1G037920.1 | Barley | cytosol | 13.71 | 7.52 |
| HORVU2Hr1G032540.2 | Barley | plastid | 19.35 | 6.55 |
| HORVU5Hr1G017550.9 | Barley | nucleus | 15.73 | 6.35 |
| HORVU2Hr1G072570.5 | Barley | plastid | 5.24 | 4.63 |
| Os04t0409600-01 | Rice | cytosol | 1.21 | 1.6 |
| HORVU0Hr1G021730.1 | Barley | cytosol | 0.4 | 0.83 |
Protein Annotations
| MapMan:12.3.2.1.1 | Gene3D:3.40.800.20 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:HORVU2Hr1G072600 | EnsemblPlants:HORVU2Hr1G072600.1 |
| InterPro:His_deacetylse | InterPro:His_deacetylse_1 | InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf | InterPro:IPR037138 | UniProt:M0XKU6 |
| PFAM:PF00850 | PRINTS:PR01271 | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF171 | SUPFAM:SSF52768 | TMHMM:TMhelix |
| UniParc:UPI0002951C18 | InterPro:Ureohydrolase_dom_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:520779318..520782487
Molecular Weight (calculated)
28025.1 Da
IEP (calculated)
4.347
GRAVY (calculated)
-0.362
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSASKNLAS FWMDVLFISI YLAVILKDIG DREGKYYAIN IPLKDGIDDT SFTRLFKTII AKVVETYLPG AIVLQCGADS LARDRLGCFN LSIEGHAECV
101: KFVKKFKIPL LVTGGGGYTK ENVARCWAVE TGVLLDTELP NEIPDNEYIK YFGPDYTLKV PNLNMDNLNS KTYLSSIKVQ VMESLRAIQH APGVQMQEVP
201: PDFYVPDFDE DELDPDERVD QHTQDKQVHR DDEYYEGDND NDHDDGGH
101: KFVKKFKIPL LVTGGGGYTK ENVARCWAVE TGVLLDTELP NEIPDNEYIK YFGPDYTLKV PNLNMDNLNS KTYLSSIKVQ VMESLRAIQH APGVQMQEVP
201: PDFYVPDFDE DELDPDERVD QHTQDKQVHR DDEYYEGDND NDHDDGGH
001: MAFSMLFTGH AECVKFVKKF NLPLLVTGGG GYTKENVARC WTVETGILLD TELPNEISEN DYIKYFAPDF SLKIPGGHIE NLNTKSYISS IKVQILENLR
101: YIQHAPSVQM QEVPPDFYIP DFDEDEQNPD VRVDQRSRDK QIQRDDEYFD GDNDNDAS
101: YIQHAPSVQM QEVPPDFYIP DFDEDEQNPD VRVDQRSRDK QIQRDDEYFD GDNDNDAS
Arabidopsis Description
HDA17Histone deacetylase 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXN8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.