Factsheet for HORVU4Hr1G044060.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G100000.1	Wheat	cytosol	84.24	72.61
TraesCS4A01G213200.1	Wheat	cytosol, mitochondrion, nucleus	83.99	72.4
TraesCS4B01G102600.1	Wheat	cytosol, mitochondrion, nucleus	83.25	71.76
Os11t0200000-01	Rice	cytosol	60.84	54.17
HORVU5Hr1G077800.1	Barley	cytosol	61.82	51.86
HORVU5Hr1G077760.1	Barley	cytosol	61.82	50.91
HORVU6Hr1G038010.6	Barley	cytosol	49.51	43.79
HORVU6Hr1G038710.1	Barley	cytosol	52.46	41.12
HORVU7Hr1G085870.2	Barley	nucleus	52.46	41.04
HORVU2Hr1G072570.5	Barley	plastid	26.35	38.08
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	19.7	32.26
HORVU1Hr1G074110.1	Barley	cytosol	21.43	22.36
HORVU0Hr1G021740.4	Barley	cytosol	4.19	22.08
HORVU1Hr1G066760.1	Barley	plastid	19.95	18.49
HORVU5Hr1G037920.1	Barley	cytosol	17.73	15.93
HORVU0Hr1G021730.1	Barley	cytosol	4.43	15.0
HORVU5Hr1G017550.9	Barley	nucleus	19.46	12.87
HORVU2Hr1G032540.2	Barley	plastid	20.94	11.6

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	UniProt:A0A287NWH0	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	EnsemblPlantsGene:HORVU4Hr1G044060	EnsemblPlants:HORVU4Hr1G044060.1	InterPro:His_deacetylse
InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850	PIRSF:PIRSF037913
PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF126	SUPFAM:SSF52768	UniParc:UPI000B46215D
InterPro:Ureohydrolase_dom_sf	:	:	:	:	:

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A287NWH0]

Coordinates

chrchr4H:-:352313530..352314846

Molecular Weight (calculated)

44295.6 Da

IEP (calculated)

6.816

GRAVY (calculated)

-0.277

Length

406 amino acids

Sequence
(BLAST)

001: MDMGTNSLPS PSCADGRKRR VCYYYDADIS NVDYGEGHAM VPRRVAMTHA LIASYGLLND MTRLRIRPAR PEELLAFHDQ KYVHLLGDLT PAGYTNDVAL
101: RRAAKEHGLG PVRRPDGSYP NDNPVIDGLL GYCQGYAGGS LAAARALCGG DHDVAINWSG GMHHACRGQA SGFCYVNDIV LAIKQLLARF RRVLYVDIDA
201: HHGDGVEEAF ADSDQVMTLS FHQYAGGFFP GTGSVDDVGK GAGLYHALNV PLKAGMDDQG YHELFKPIVG RAMQVFQPEA VVLQCGADSL SGDRLAGLDL
301: SVGGHAECVR YLRGFDAPLL LLGGGGYTIN HVASCWCYET AVAVGREEIP NEIPHHPYEH YYRGQGYMLQ YRTKARRSPR DGDKKEADAI RVKALEHLSA
401: IRCAPN

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.