Factsheet for HORVU5Hr1G077760.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G077800.1	Barley	cytosol	97.57	99.38
TraesCS5A01G295000.1	Wheat	cytosol	82.15	83.68
TraesCS5D01G302400.1	Wheat	cytosol	83.16	82.83
HORVU4Hr1G044060.1	Barley	cytosol	50.91	61.82
HORVU6Hr1G038010.6	Barley	cytosol	43.41	46.62
HORVU6Hr1G038710.1	Barley	cytosol	46.25	44.02
HORVU7Hr1G085870.2	Barley	nucleus	46.25	43.93
HORVU2Hr1G072570.5	Barley	plastid	22.31	39.15
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	17.44	34.68
HORVU0Hr1G021740.4	Barley	cytosol	3.45	22.08
HORVU1Hr1G066760.1	Barley	plastid	18.86	21.23
HORVU1Hr1G074110.1	Barley	cytosol	16.43	20.82
HORVU5Hr1G037920.1	Barley	cytosol	14.2	15.49
HORVU5Hr1G017550.9	Barley	nucleus	18.66	14.98
HORVU0Hr1G021730.1	Barley	cytosol	3.45	14.17
HORVU2Hr1G032540.2	Barley	plastid	20.89	14.05

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	UniProt:A0A287RWN8	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932	EnsemblPlantsGene:HORVU5Hr1G077760	EnsemblPlants:HORVU5Hr1G077760.1
InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	PFAM:PF00850
PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF126	SUPFAM:SSF52768
UniParc:UPI000B4832DF	InterPro:Ureohydrolase_dom_sf	SEG:seg	:	:	:

Description

Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A287RWN8]

Coordinates

chrchr5H:+:554002951..554004432

Molecular Weight (calculated)

55393.5 Da

IEP (calculated)

6.931

GRAVY (calculated)

-0.544

Length

493 amino acids

Sequence
(BLAST)

001: MDKEGHSLPS ASCADGRKRR VCYYYDPGIA NVDYGADHHM VPRRVAMAHA LVEKYGLLAD MERLRVRPAT KAELRAFHDD AYVRLLHDIT QDADHRQGDA
101: EILETARACG IGVPDPGETA AYDNPVIDGL WDYCVRYAGG SLAAARALAS GTSDIAINWS GGMHHACQGR ASGFCYVNDI VLAIQELLKH FERVLYVDID
201: VHHGDGVEEH FKRESRVMTV SFHRYGEDRP GGEKFFPGTG TAEDVGEGDG KYYTLNVPMD AHMDDESYQH LFRPIMHKVM EKFVPDAVVL QCGADSLYGD
301: RLGNFRLSVK GHAGCVSYLR SFNVPLLLLG GGGYTINHVA SCWCYETAVA VGKEEGISDE IPFHGYEHYY RDQGYKLHFT VPKTNGNKID VAAMEKIKQD
401: ALMNLAMLKP PPTTQRHRRP SKRHGIDVNA LFDHHSKNSK EKDKKSKKYR REEDDPMERL HRLCCEADRY SFFTELGKRK ACEVANTTFS NPK

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.