Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G074110.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08460.1 | HORVU1Hr1G074110.1 | AT1G08460.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G284500.1 | Wheat | cytosol, nucleus, plastid | 93.57 | 92.62 |
| TraesCS1A01G275300.1 | Wheat | cytosol, nucleus, plastid | 92.03 | 91.56 |
| TraesCS1D01G274900.1 | Wheat | cytosol, nucleus, plastid | 86.12 | 91.53 |
| Os05t0440250-01 | Rice | cytosol, nucleus, plastid | 86.89 | 86.22 |
| EES19606 | Sorghum | cytosol | 85.09 | 84.87 |
| VIT_06s0080g00210.t01 | Wine grape | nucleus | 67.35 | 75.29 |
| GSMUA_Achr6P19520_001 | Banana | cytosol | 73.26 | 73.83 |
| Solyc06g074080.2.1 | Tomato | cytosol | 70.18 | 70.91 |
| PGSC0003DMT400015085 | Potato | cytoskeleton, cytosol, nucleus | 68.12 | 69.92 |
| AT1G08460.1 | Thale cress | cytosol | 66.84 | 68.97 |
| Bra031628.1-P | Field mustard | cytosol | 67.61 | 68.13 |
| CDY22682 | Canola | cytosol | 67.61 | 68.13 |
| KRH26679 | Soybean | cytosol | 66.58 | 67.98 |
| CDY06315 | Canola | cytosol | 66.58 | 67.1 |
| Os05t0440300-01 | Rice | cytosol, nucleus, plastid | 64.01 | 63.04 |
| Zm00001d010152_P002 | Maize | cytosol | 65.04 | 44.94 |
| Zm00001d010162_P002 | Maize | cytosol | 65.04 | 44.94 |
| HORVU1Hr1G066760.1 | Barley | plastid | 25.96 | 23.06 |
| HORVU4Hr1G044060.1 | Barley | cytosol | 22.36 | 21.43 |
| HORVU5Hr1G037920.1 | Barley | cytosol | 22.36 | 19.25 |
| HORVU6Hr1G038010.6 | Barley | cytosol | 21.08 | 17.86 |
| HORVU2Hr1G072570.5 | Barley | plastid | 12.85 | 17.79 |
| HORVU5Hr1G017550.9 | Barley | nucleus | 27.51 | 17.43 |
| HORVU0Hr1G021740.4 | Barley | cytosol | 3.34 | 16.88 |
| HORVU5Hr1G077800.1 | Barley | cytosol | 20.82 | 16.74 |
| HORVU6Hr1G038710.1 | Barley | cytosol | 22.11 | 16.6 |
| HORVU5Hr1G077760.1 | Barley | cytosol | 20.82 | 16.43 |
| HORVU7Hr1G085870.2 | Barley | nucleus | 21.34 | 15.99 |
| HORVU2Hr1G072600.1 | Barley | endoplasmic reticulum | 9.77 | 15.32 |
| HORVU2Hr1G032540.2 | Barley | plastid | 27.51 | 14.6 |
| HORVU0Hr1G021730.1 | Barley | cytosol | 2.57 | 8.33 |
Protein Annotations
| MapMan:12.3.2.1.2 | Gene3D:3.40.800.20 | UniProt:A0A287G8I7 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006325 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0032041 |
| GO:GO:0070932 | EnsemblPlantsGene:HORVU1Hr1G074110 | EnsemblPlants:HORVU1Hr1G074110.1 | InterPro:His_deacetylse | InterPro:His_deacetylse_dom | InterPro:His_deacetylse_dom_sf |
| InterPro:IPR037138 | PFAM:PF00850 | PRINTS:PR01270 | PANTHER:PTHR10625 | PANTHER:PTHR10625:SF121 | SUPFAM:SSF52768 |
| UniParc:UPI000B46390C | InterPro:Ureohydrolase_dom_sf | SEG:seg | : | : | : |
Description
Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:A0A287G8I7]
Coordinates
chrchr1H:+:506754976..506757594
Molecular Weight (calculated)
42252.0 Da
IEP (calculated)
5.700
GRAVY (calculated)
-0.190
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSSSVAA EGAPPAAENL AVFWHEGMLA HDAGRGLFDS GRDPGFLDVL DHHPENADRV RNMVSILRRG PIAPFLSWHS GVPAHASELL SFHSPEYIDE
101: LVQANASGGK KLCEGTFLNP GSWGAALLAA GTTLSAMRHI LDGHGKIAYA LVRPPGHHAQ PDHADGYCFL NNAGLAVHLA LHSGRAKVAI VDIDVHYGNG
201: AAEGFYRMDN VLTISLHMNH GSWGPSHPQS GSSDEIGEGR GLGYNLNIPL PNGSGDLGYE YAMNELVVPA IDKFQPQLLV FVIGQDSSMF DPNGRQCLTM
301: DGYRKIGQIM RSMANRHSDG QILIVQEGGY HISYSAYCLH ATLEGVLNLE APLLDDPLAY YPEDEKYAMQ VVDVMKKYWK ESIPFLRDI
101: LVQANASGGK KLCEGTFLNP GSWGAALLAA GTTLSAMRHI LDGHGKIAYA LVRPPGHHAQ PDHADGYCFL NNAGLAVHLA LHSGRAKVAI VDIDVHYGNG
201: AAEGFYRMDN VLTISLHMNH GSWGPSHPQS GSSDEIGEGR GLGYNLNIPL PNGSGDLGYE YAMNELVVPA IDKFQPQLLV FVIGQDSSMF DPNGRQCLTM
301: DGYRKIGQIM RSMANRHSDG QILIVQEGGY HISYSAYCLH ATLEGVLNLE APLLDDPLAY YPEDEKYAMQ VVDVMKKYWK ESIPFLRDI
001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT
Arabidopsis Description
HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.