Factsheet for Os05t0440250-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G284500.1	Wheat	cytosol, nucleus, plastid	88.52	88.3
TraesCS1D01G274900.1	Wheat	cytosol, nucleus, plastid	81.63	87.43
HORVU1Hr1G074110.1	Barley	cytosol	86.22	86.89
TraesCS1A01G275300.1	Wheat	cytosol, nucleus, plastid	86.48	86.7
EES19606	Sorghum	cytosol	85.46	85.9
GSMUA_Achr6P19520_001	Banana	cytosol	74.23	75.39
Os05t0440300-01	Rice	cytosol, nucleus, plastid	70.66	70.13
Zm00001d010162_P002	Maize	cytosol	66.07	46.0
Zm00001d010152_P002	Maize	cytosol	66.07	46.0
Os12t0182700-01	Rice	mitochondrion	21.68	19.19
Os11t0200000-01	Rice	cytosol	21.94	18.86
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	21.94	18.78
Os07t0164100-01	Rice	nucleus	28.06	17.66
Os06t0571100-01	Rice	plastid	15.31	17.05
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	21.94	16.86
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	21.68	16.7
Os06t0583400-01	Rice	nucleus	21.68	16.41
Os07t0602200-01	Rice	cytosol, nucleus, plastid	27.81	15.68
Os04t0409600-01	Rice	cytosol	6.89	14.36
Os05t0440100-02	Rice	cytosol	2.81	4.01
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	EntrezGene:4338920	ProteinID:AAU90087.1	EMBL:AK073094	EMBL:AK102786
ProteinID:BAF17581.1	ProteinID:BAS94235.1	ProteinID:EEE63868.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	EnsemblPlantsGene:Os05g0440250
EnsemblPlants:Os05t0440250-01	PFAM:PF00850	PRINTS:PR01270	PANTHER:PTHR10625	PANTHER:PTHR10625:SF121	UniProt:Q60DG7
SUPFAM:SSF52768	UniParc:UPI00004447FA	InterPro:Ureohydrolase_dom_sf	RefSeq:XP_015640137.1	SEG:seg	:

Description

Histone deacetylase superfamily protein. (Os05t0440250-01)

Coordinates

chr5:-:21561375..21564322

Molecular Weight (calculated)

42439.3 Da

IEP (calculated)

6.014

GRAVY (calculated)

-0.182

Length

392 amino acids

Sequence
(BLAST)

001: MESSASSSAA VAAEGAPATG EQLAVFWHEG MVAHDAGRGV FDSGRDPGFL DVLDQHPENA DRVRNMVSIL RRGPIARFIS WHSGRPAHAA ELLSFHSAEY
101: IEELVQANAV GAKKLCEGTF LNPGSWGAAL LAAGTTLSAM KHILDGHAKI AYALVRPPGH HAQPDRADGY CFLNNAGLAV KLALDSGRRK VAVVDIDVHY
201: GNGTAEGFYH TDSVLTISLH MKHGSWGPSH PQSGSVDEIG EGRGLGYNLN IPLPNGSGDA GYEYAMNELV VPAIEKFRPE LLVFVVGQDS STFDPNGRQC
301: LTMDGYRKIG QIMRGMADQH SNGQILIVQE GGYHISYSAY CLHATLEGVL NLQAPLLDDP IAYYPEDEKY TMKVVDIMKK CWKESIPFLK DI

Best Arabidopsis Sequence Match ( AT1G08460.1 )
(BLAST)

001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT

Arabidopsis Description

HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.