Factsheet for Os05t0440300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0440250-01	Rice	cytosol, nucleus, plastid	70.13	70.66
TraesCS1B01G284500.1	Wheat	cytosol, nucleus, plastid	63.8	64.12
HORVU1Hr1G074110.1	Barley	cytosol	63.04	64.01
TraesCS1A01G275300.1	Wheat	cytosol, nucleus, plastid	63.04	63.68
EES19606	Sorghum	cytosol	62.53	63.33
TraesCS1D01G274900.1	Wheat	cytosol, nucleus, plastid	56.71	61.2
GSMUA_Achr6P19520_001	Banana	cytosol	57.22	58.55
Zm00001d010162_P002	Maize	cytosol	45.32	31.79
Zm00001d010152_P002	Maize	cytosol	45.32	31.79
Os12t0182700-01	Rice	mitochondrion	20.51	18.28
Os11t0200000-01	Rice	cytosol	18.48	16.01
Os07t0164100-01	Rice	nucleus	24.81	15.73
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	17.97	15.5
Os06t0583400-01	Rice	nucleus	18.23	13.9
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	17.72	13.73
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	17.47	13.56
Os06t0571100-01	Rice	plastid	11.9	13.35
Os07t0602200-01	Rice	cytosol, nucleus, plastid	23.29	13.24
Os04t0409600-01	Rice	cytosol	3.8	7.98
Os05t0440100-02	Rice	cytosol	2.78	4.01
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	ProteinID:AAU90088.1	ProteinID:BAF17582.1	ProteinID:BAS94237.1	ProteinID:EEE63869.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575
GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom
InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	EnsemblPlantsGene:Os05g0440300	EnsemblPlants:Os05t0440300-01	PFAM:PF00850	PRINTS:PR01270
PANTHER:PTHR10625	PANTHER:PTHR10625:SF121	UniProt:Q60DG6	SUPFAM:SSF52768	UniParc:UPI00004447FB	InterPro:Ureohydrolase_dom_sf
SEG:seg	:	:	:	:	:

Description

Similar to S1 self-incompatibility locus-linked G221 protein (Fragment). (Os05t0440300-01)

Coordinates

chr5:-:21567352..21571809

Molecular Weight (calculated)

43603.3 Da

IEP (calculated)

6.692

GRAVY (calculated)

-0.158

Length

395 amino acids

Sequence
(BLAST)

001: MMDKRVIANL MEERRWVEVT NNGRRTTENV YAVFTGSVVR HYPRRLFSLL TLALACVEEG RFRQRLISGR VSCKQIKIFI SCAVQRVPLL DQVPCSITVT
101: NTEELVQADS AGANNNKICE CTFLNPGSWD AALLAAGTTL SAMKHILDGH AKIAYALVRP PGHHAQPDRA DGYCFLNNAG LAVKLALDSG RRRVAVVDID
201: VHYGNGTAEG FYHTDSVLTI SLHMKHGSWG PSHPQSGLVD ETGEGRGLGY NLNIPLPNGS GDAGYEYAMN ELVVPAIEKF RPELMVFVVG QDSSAFDPNG
301: RQCLTMDGYR KIGQIMRGMA DQHSNGQILI VQEGGYHITY SAYCLHATLE GVLNLQAPLL DDPLGFYPDD EKYTMQAVDI IKKCWKESIP FLKDI

Best Arabidopsis Sequence Match ( AT1G08460.1 )
(BLAST)

001: MVTNRVDVFW HEGMLRHDAV EGVFDTGYDP GFLDVLEKHP ENADRVRNML SILRRGPIAP HVNWFTGLPA IVSELLMFHT SEYIEKLVEA DKSGERCEIA
101: AGTFMSPGSW EAALLAAGTT LSAMQHILDC HGKIAYALVR PPGHHSQPTQ ADGYCFLNNA ALAVKLALNS GSCSRVAVID IDVHYGNGTA EGFYTSDKVL
201: TVSLHMNHGS WGSSHPQKGS IDELGEDVGL GYNLNVPLPN GTGDRGYEYA MNELVVPAVR RFGPDMVVLV VGQDSSAFDP NGRQSLTMNG YRRIGQIMRG
301: VAEEHSHGRL LMVQEGGYHV TYAAYCLHAM LEGVLKIPEP HLSDPIAYYP EEEANAVAAV ESIKTYHTEF VPFLRGT

Arabidopsis Description

HDA8Histone deacetylase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.