Factsheet for Os07t0164100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

nucleus: 18203134
nucleus: 23777608

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G065300.1	Wheat	nucleus	76.73	77.85
TraesCS5B01G072100.1	Wheat	nucleus	75.76	76.87
TraesCS5D01G076100.1	Wheat	nucleus	75.44	76.8
HORVU5Hr1G017550.9	Barley	nucleus	74.96	76.06
Zm00001d018864_P002	Maize	nucleus	71.27	71.73
OQU88485	Sorghum	nucleus	71.91	71.22
KRH56687	Soybean	nucleus	44.62	66.67
CDX82341	Canola	nucleus	41.09	57.66
KRH03799	Soybean	nucleus	48.31	55.43
Bra001708.1-P	Field mustard	nucleus	36.92	55.16
CDY24487	Canola	cytosol, nucleus, peroxisome	47.67	54.6
AT3G18520.2	Thale cress	cytosol	47.99	53.01
GSMUA_Achr8P20260_001	Banana	nucleus	53.77	52.92
PGSC0003DMT400014582	Potato	nucleus	50.72	51.8
CDX92243	Canola	nucleus	47.35	51.75
Bra022329.1-P	Field mustard	nucleus	47.03	51.4
Solyc03g119730.2.1	Tomato	nucleus	50.24	51.31
VIT_17s0000g04120.t01	Wine grape	nucleus	50.24	44.91
CDY52901	Canola	nucleus	29.21	39.06
Os05t0440250-01	Rice	cytosol, nucleus, plastid	17.66	28.06
Os12t0182700-01	Rice	mitochondrion	18.3	25.73
Os05t0440300-01	Rice	cytosol, nucleus, plastid	15.73	24.81
Os07t0602200-01	Rice	cytosol, nucleus, plastid	26.32	23.6
Os11t0200000-01	Rice	cytosol	13.96	19.08
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	13.32	18.12
Os06t0571100-01	Rice	plastid	10.11	17.9
Os06t0583400-01	Rice	nucleus	14.61	17.57
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	14.13	17.29
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	14.13	17.25
Os04t0409600-01	Rice	cytosol	3.69	12.23
Os05t0440100-02	Rice	cytosol	1.12	2.55
Os07t0164300-01	Rice	plasma membrane	0.32	0.66

Protein Annotations

MapMan:12.3.2.1.2	Gene3D:3.40.800.20	EntrezGene:4342472	ProteinID:BAF20871.1	ProteinID:BAT00189.1	ProteinID:EAZ38793.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009294	GO:GO:0009987	GO:GO:0016043
GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR001876	InterPro:IPR037138	EnsemblPlantsGene:Os07g0164100	EnsemblPlants:Os07t0164100-01
PFAM:PF00850	PRINTS:PR01270	ScanProsite:PS01358	PANTHER:PTHR10625	PANTHER:PTHR10625:SF180	UniProt:Q0D8F2
SUPFAM:SSF52768	UniParc:UPI0000E129E6	InterPro:Ureohydrolase_dom_sf	RefSeq:XP_015647003.1	InterPro:Znf_RanBP2	SEG:seg

Description

histone deacetylase 704Histone deacetylase superfamily protein. (Os07t0164100-01)

Coordinates

chr7:-:3436026..3444708

Molecular Weight (calculated)

67069.9 Da

IEP (calculated)

5.647

GRAVY (calculated)

-0.261

Length

623 amino acids

Sequence
(BLAST)

001: MASDMRSLNS QKGQSCGVSD QACHSKSKSG NDGKPSHAKA NGVSSLSGSH NDEKILKENS GACNLNSDHA NPLSVDGTKV STARSELIDS SGHDGCLHVK
101: NESCMACDDL LQESDKEQPG GTLEDLFSFN DEEDDDSDWE PSARLALSRW FCLNCTVPNM EGFTHCQNCD ELKGSVVVGY DAFKAHLAQA ALLSADAALP
201: SVSTAVGFDE RMLLHSEIEI KPNPHPERPD RLRAIAASLA AAGIFPSKCV MVPPREITKE ELLRVHTSDH IDSVEQTKNM LYSYFTSDTY ANGHSACAAK
301: LAAGICADLA NLIVSGRVRN GFAMVRPPGH HAGVKQAMGF CLHNNAAVAA LAAQRAGAKK VLIVDWDVHH GNGTQEIFDG DNSVLYISLH RHEDGSFYPG
401: TGAANEVGVM DGQGFSVNIP WSRGGVGDND YIFAFKHVVL PIAAEFAPDI TIISAGFDAA RGDPLGCCDV TPAGYSRMAS MLTACSQGKL LVILEGGYNL
501: RSISSSATEV VKVLLGDSPV YDTDATEPSE EGIQTVLQVL SIQQQFWPVL VPSFASVLAL QRSVFSRYTT EVNKMKRKHA GGAGPFWWKW GSKRLLYEVL
601: FEGRCLRKTK DTGKEKLNDE AEP

Best Arabidopsis Sequence Match ( AT3G18520.1 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.