Factsheet for PGSC0003DMT400014582

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g119730.2.1	Tomato	nucleus	95.9	95.9
KRH56687	Soybean	nucleus	51.64	75.54
KRH03799	Soybean	nucleus	57.87	65.01
CDX82341	Canola	nucleus	46.23	63.51
CDY24487	Canola	cytosol, nucleus, peroxisome	55.9	62.68
Bra001708.1-P	Field mustard	nucleus	41.15	60.19
Bra022329.1-P	Field mustard	nucleus	55.74	59.65
CDX92243	Canola	nucleus	55.74	59.65
AT3G18520.2	Thale cress	cytosol	54.43	58.87
VIT_17s0000g04120.t01	Wine grape	nucleus	65.08	56.96
GSMUA_Achr8P20260_001	Banana	nucleus	56.23	54.19
TraesCS5D01G076100.1	Wheat	nucleus	52.46	52.29
TraesCS5A01G065300.1	Wheat	nucleus	52.13	51.79
Zm00001d018864_P002	Maize	nucleus	52.13	51.37
TraesCS5B01G072100.1	Wheat	nucleus	51.48	51.14
HORVU5Hr1G017550.9	Barley	nucleus	51.48	51.14
Os07t0164100-01	Rice	nucleus	51.8	50.72
OQU88485	Sorghum	nucleus	51.64	50.08
CDY52901	Canola	nucleus	35.25	46.14
PGSC0003DMT400015085	Potato	cytoskeleton, cytosol, nucleus	18.36	29.55
PGSC0003DMT400068240	Potato	cytosol	13.11	20.15
PGSC0003DMT400046818	Potato	cytosol	13.61	18.2
PGSC0003DMT400076991	Potato	cytosol	10.0	17.23
PGSC0003DMT400069419	Potato	nucleus	12.62	16.35
PGSC0003DMT400076252	Potato	nucleus	13.93	15.86
Os07t0164300-01	Rice	plasma membrane	0.66	1.32

Protein Annotations

EntrezGene:102603454	MapMan:12.3.2.1.2	Gene3D:3.40.800.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325
GO:GO:0006351	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009294	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569	GO:GO:0016575	GO:GO:0016787
GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR001876	InterPro:IPR037138	UniProt:M1A4H7	PFAM:PF00850	EnsemblPlantsGene:PGSC0003DMG400005706	PGSC:PGSC0003DMG400005706
EnsemblPlants:PGSC0003DMT400014582	PRINTS:PR01270	ScanProsite:PS01358	PANTHER:PTHR10625	PANTHER:PTHR10625:SF180	SUPFAM:SSF52768
UniParc:UPI0002950340	InterPro:Ureohydrolase_dom_sf	RefSeq:XP_006341634.1	InterPro:Znf_RanBP2	SEG:seg	:

Description

Histone deacetylase hda1 [Source:PGSC_GENE;Acc:PGSC0003DMG400005706]

Coordinates

chr3:+:59122818..59132173

Molecular Weight (calculated)

66624.3 Da

IEP (calculated)

4.998

GRAVY (calculated)

-0.285

Length

610 amino acids

Sequence
(BLAST)

001: MILVQKCVTS SEGNEISESS NMSYLTGGKT ETNLPNQSEV VLCQDLNGRL DGVGSAVVCD YTCHNDGQSG EVSQLCTRDS DGISGLNADP AAITKSAKHE
101: SDMTLEDMYN ARYNFDEDDD DSDWEPSEKQ IEVLKWFCVN CTMINVEDVG NCEVCGEHRE SGILSHGFFA SPYLPLEDVN QDELPVTEDS EDSCKQSSLS
201: SSTAVGFDER MLLHTEVVMK SHPHPERPDR LRSIAASLAT AGIFPGKCYP IPAREITREE LQMVHSEENI EAVDNTKRMH ASYFTPDTYA NEHSACAARL
301: AAGLCADLAS AIYSGRVKNG FALVRPPGHH AGVKQAMGFC LHNNAAIAAS AAQAAGAKKV LIVDWDVHHG NGTQEIFERS KSVLYISLHR HEGGRFYPGT
401: GAADEVGSMG AEGYCVNIPW SRGGVSDNDY IFAFEQVVLP IALDFNPDLT IISAGFDAAR GDPLGCCDVT PAGYASMTQI LSALSGGKLL VILEGGYNLR
501: SISSSATAVI KVLLGESPTI DIENTVPSKA GLRSVLDVLK IQMNFWPTLE ANFTKLHSEW GSYAFQDTRE QSKKRRRTGL PIWWRWGRKR LLYRILSKQL
601: RAKSSCNFSC

Best Arabidopsis Sequence Match ( AT3G18520.1 )
(BLAST)

001: MVVETIERSC EGSKRRHVNG GDIAVPCSGE ECSNGDINVA PGVSAKRARV SREMTFEDIY GADALLNDDD DEDDDCDWEP VQAPMEFVKW CCVNCTMSNP
101: GDMVHCCICG EHKESGILRH GYLASPFFKD TGLIEVEEKY GGSSSATSST AVGFDERMLL HSEFEVKAQP HPERPDRLRA IAASLATAGV FPGRCLPINA
201: REITKQELQM VHTSEHVDAV DTTSQLLYSY FTSDTYANEY SARAARLAAG LCADLATDIF TGRVKNGFAL VRPPGHHAGV RHAMGFCLHN NAAVAALVAQ
301: AAGAKKVLIV DWDVHHGNGT QEIFEQNKSV LYISLHRHEG GNFYPGTGAA DEVGSNGGEG YCVNVPWSCG GVGDKDYIFA FQHVVLPIAS AFSPDFVIIS
401: AGFDAARGDP LGCCDVTPAG YSRMTQMLGD LCGGKMLVIL EGGYNLRSIS ASATAVIKVL LGENPENELP IATTPSVAGL QTVLDVLNIQ LEFWPSLAIS
501: YSKLLSELEA RLIENKKNQM KRKVVRVPTW WKWGRKKLLY NFLSARMISR SK

Arabidopsis Description

HDA15Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F4J8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.