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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400008765
PGSC0003DMT400013682
PGSC0003DMT400029517
PGSC0003DMT400053430
PGSC0003DMT400056570
PGSC0003DMT400061752
PGSC0003DMT400093216

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G63110.1 PGSC0003DMT400008765 AT3G62980.1 12445118
AT5G63110.1 PGSC0003DMT400013682 AT3G62980.1 12445118
AT5G63110.1 PGSC0003DMT400029517 AT3G62980.1 12445118
AT5G63110.1 PGSC0003DMT400053430 AT3G62980.1 12445118
AT5G63110.1 PGSC0003DMT400056570 AT3G62980.1 12445118
AT5G63110.1 PGSC0003DMT400061752 AT3G62980.1 12445118
AT5G63110.1 PGSC0003DMT400093216 AT3G62980.1 12445118
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc03g112410.1.1 Tomato cytosol 93.64 95.1
KRH54336 Soybean cytosol, nucleus, plastid 26.1 74.38
GSMUA_Achr2P06520_001 Banana cytosol 57.24 71.7
PGSC0003DMT400069419 Potato nucleus 72.59 70.28
GSMUA_AchrUn_... Banana mitochondrion 55.04 69.34
KRH03236 Soybean nucleus 71.71 69.28
KRH57122 Soybean nucleus 71.71 68.7
KRH63609 Soybean cytosol 69.3 67.96
Bra035858.1-P Field mustard nucleus 68.64 66.6
CDY48127 Canola nucleus 68.64 66.6
CDY16736 Canola nucleus 68.64 66.6
AT5G63110.1 Thale cress nucleus 68.42 66.24
EES13744 Sorghum cytoskeleton, cytosol, nucleus 63.6 63.32
CDX84385 Canola cytosol 69.08 62.38
TraesCS6D01G168400.1 Wheat cytosol 62.28 62.01
TraesCS6B01G210200.1 Wheat cytosol 62.28 62.01
TraesCS6A01G181100.1 Wheat cytosol 62.28 62.01
Os08t0344100-01 Rice cytoskeleton, cytosol, nucleus 62.06 61.79
HORVU6Hr1G038010.6 Barley cytosol 62.06 61.66
Zm00001d050139_P001 Maize nucleus 63.6 59.06
KRH54335 Soybean cytosol, nucleus, plastid 29.17 56.84
CDY41500 Canola cytosol 69.08 55.26
Bra038607.1-P Field mustard cytosol 68.42 54.74
PGSC0003DMT400068240 Potato cytosol 46.93 53.9
PGSC0003DMT400076252 Potato nucleus 58.99 50.19
Zm00001d024221_P001 Maize cytosol, nucleus, plastid, vacuole 16.23 37.76
PGSC0003DMT400076991 Potato cytosol 19.3 24.86
PGSC0003DMT400015085 Potato cytoskeleton, cytosol, nucleus 17.54 21.11
PGSC0003DMT400014582 Potato nucleus 18.2 13.61
Protein Annotations
EntrezGene:102605718MapMan:12.3.2.1.1Gene3D:3.40.800.20GO:GO:0000003GO:GO:0003674GO:GO:0003824
GO:GO:0004407GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005737GO:GO:0006139GO:GO:0006325GO:GO:0006351GO:GO:0006355GO:GO:0006464
GO:GO:0006950GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009536
GO:GO:0009628GO:GO:0009651GO:GO:0009719GO:GO:0009737GO:GO:0009790GO:GO:0009791
GO:GO:0009793GO:GO:0009941GO:GO:0009987GO:GO:0010228GO:GO:0010431GO:GO:0016043
GO:GO:0016441GO:GO:0016458GO:GO:0016569GO:GO:0016575GO:GO:0016787GO:GO:0019538
GO:GO:0032041GO:GO:0040029GO:GO:0046872GO:GO:0070932InterPro:His_deacetylseInterPro:His_deacetylse_1
InterPro:His_deacetylse_domInterPro:His_deacetylse_dom_sfInterPro:IPR037138UniProt:M1BJP2PFAM:PF00850EnsemblPlantsGene:PGSC0003DMG400018178
PGSC:PGSC0003DMG400018178EnsemblPlants:PGSC0003DMT400046818PIRSF:PIRSF037913PRINTS:PR01270PRINTS:PR01271PANTHER:PTHR10625
PANTHER:PTHR10625:SF144SUPFAM:SSF52768UniParc:UPI000295CF5BInterPro:Ureohydrolase_dom_sfRefSeq:XP_006344456.1SEG:seg
Description
Histone deacetylase [Source:PGSC_GENE;Acc:PGSC0003DMG400018178]
Coordinates
chr3:+:52177098..52180098
Molecular Weight (calculated)
51464.2 Da
IEP (calculated)
4.957
GRAVY (calculated)
-0.418
Length
456 amino acids
Sequence
(BLAST)
001: MDSSVVEGGA SLRSPGTDAT NRRVSYFFDS SIGEYYYGQG HLMKPHRIRV AHNLILNYNL HRKMEIIQPF PATKEEIGWF HSSDYVEFLS SVSPEIVNDK
101: YDSYQRRRFN VGSDSESFDC PLFYGLFDFC QTSAGGSIGA AAKLNRNEAD IAINWAGGLH HAKKSEASGF CYVNDIVLGI LELLKVHKRV LYVDIDVHHG
201: DGVEEAFYTT DRVMTVSFHK FGDFFPGTGH VKDIGASTGK YYALNAPLNN GIDDESFRSL FRPVIQKVME VYQPEAVVLQ CGADSLAGDR LGVFNLSVKG
301: HADCIRFLRS FNVPLMMLGG GGYTVKNVAR CWCYETAVAV GVEPDNDLPY SEFYEYFAPD YILYHESLPM KNENSPSELE RIRNTLLEQL SHLPHVPSVP
401: FQVTPSVTEV PEKEDENMDQ RPKPGIQMSQ DYDTDDEEKS NNGKFSNYYN YFNNEN
Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)
001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S
Arabidopsis Description
HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.