CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96377
KRG97777
KRH14993
KRH31107
KRH31921
KRH68108
KRH71533
KRH73146

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	KRG97777	AT2G39940.1	12445118
AT5G63110.1	KRH14993	AT2G39940.1	12445118
AT5G63110.1	KRH31107	AT2G39940.1	12445118
AT5G63110.1	KRH73146	AT2G39940.1	12445118
AT5G63110.1	KRG96377	AT3G62980.1	12445118
AT5G63110.1	KRH31921	AT3G62980.1	12445118
AT5G63110.1	KRH68108	AT3G62980.1	12445118
AT5G63110.1	KRH71533	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57122	Soybean	nucleus	96.61	95.8
VIT_17s0000g09070.t01	Wine grape	cytosol	80.51	81.9
KRH54336	Soybean	cytosol, nucleus, plastid	27.33	80.62
KRH63609	Soybean	cytosol	77.75	78.92
PGSC0003DMT400069419	Potato	nucleus	78.39	78.56
Solyc06g071680.2.1	Tomato	cytosol	78.18	78.34
GSMUA_Achr2P06520_001	Banana	cytosol	60.38	78.3
Bra035858.1-P	Field mustard	nucleus	76.06	76.38
CDY48127	Canola	nucleus	76.06	76.38
CDY16736	Canola	nucleus	76.06	76.38
AT5G63110.1	Thale cress	nucleus	75.42	75.58
GSMUA_AchrUn_...	Banana	mitochondrion	55.72	72.65
Solyc03g112410.1.1	Tomato	cytosol	68.64	72.16
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	69.7	71.83
PGSC0003DMT400046818	Potato	cytosol	69.28	71.71
TraesCS6D01G168400.1	Wheat	cytosol	69.07	71.18
TraesCS6B01G210200.1	Wheat	cytosol	69.07	71.18
TraesCS6A01G181100.1	Wheat	cytosol	69.07	71.18
HORVU6Hr1G038010.6	Barley	cytosol	68.86	70.81
CDX84385	Canola	cytosol	75.21	70.3
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	67.8	69.87
Zm00001d050139_P001	Maize	nucleus	69.7	67.01
KRH54335	Soybean	cytosol, nucleus, plastid	32.63	65.81
KRH63610	Soybean	cytosol	26.27	62.94
CDY41500	Canola	cytosol	75.42	62.46
Bra038607.1-P	Field mustard	cytosol	74.79	61.93
KRH60609	Soybean	nucleus	63.14	59.96
KRH51318	Soybean	nucleus	62.92	59.76
KRH27562	Soybean	nucleus	62.71	59.56
KRH77972	Soybean	nucleus	62.29	59.15
KRH25183	Soybean	cytosol	49.79	54.78
KRH30495	Soybean	cytosol	49.58	54.55
KRH16462	Soybean	nucleus	7.42	44.87
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	17.58	42.35
KRH05486	Soybean	cytosol	18.64	25.29
KRH26679	Soybean	cytosol	16.95	21.0
KRH56687	Soybean	nucleus	16.95	19.18
KRH59585	Soybean	plastid	16.95	19.05
KRH03799	Soybean	nucleus	18.22	15.84
KRH56821	Soybean	nucleus	20.76	14.94
KRH03123	Soybean	cytosol	20.55	14.79

Protein Annotations

EntrezGene:100819221	MapMan:12.3.2.1.1	Gene3D:3.40.800.20	EMBL:ACUP02010340	EnsemblPlantsGene:GLYMA_17G085700	GO:GO:0003674
GO:GO:0003824	GO:GO:0004407	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016569
GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0046872	GO:GO:0070932
InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	UniProt:I1MTD8	InterPro:IPR037138
EnsemblPlants:KRH03236	ProteinID:KRH03236	ProteinID:KRH03236.1	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270
PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144	SUPFAM:SSF52768	UniParc:UPI000233F1E4	InterPro:Ureohydrolase_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:6625088..6629060

Molecular Weight (calculated)

52925.1 Da

IEP (calculated)

5.153

GRAVY (calculated)

-0.476

Length

472 amino acids

Sequence
(BLAST)

001: MGMEEESSII EGGASLPSSG SDAKKRRVTY FYEPTIGDYY YGQGHPMKPH RIRMAHNLIV HYSLHRRMEI NRPFPASPAD IRRFHSDDYV DFLSSVSPET
101: LADSAFSRHL KRFNVGEDCP VFDGLFPFCQ ASAGGSLGAA VKLNRADADI AINWAGGLHH AKKSEASGFC YVNDIVLGIL ELLKAHRRVL YVDIDVHHGD
201: GVEEAFYTTD RVMTVSFHKF GDFFPGTGHV KDIGVGSGKN YAVNVPLNDG MDDESFRSLF RSIIQKVMEV YQPEAVVLQC GADSLSGDRL GCFNLSVRGH
301: ADCLRFLRSF NVPLMVLGGG GYTIRNVARC WCYETAVAVG VEPDNKLPYN EYYEYFGPDY TLYVDPSNME NLNTSKDLEK LRNTLLEQIS RLPHAPSVPF
401: QTTPPTLQLP EEAEENMDRR PKLRKWDGED YDSDPEEGGK DNSKFSNITA HMRDIADEME EEKPEEHPSS CS

Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)

001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S

Arabidopsis Description

HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.