CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94317
KRG96405
KRG97777
KRH03236
KRH10462
KRH14993
KRH23810
KRH31107
KRH33363
KRH39044
KRH39972
KRH43983
KRH54335
KRH54336
KRH57122
KRH57651
KRH63609
KRH68142
KRH73146

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39940.1	KRG97777	AT2G39940.1	12724535
AT2G39940.1	KRH14993	AT2G39940.1	12724535
AT2G39940.1	KRH31107	AT2G39940.1	12724535
AT2G39940.1	KRH73146	AT2G39940.1	12724535
AT2G39940.1	KRH39044	AT3G17860.1	17637675
AT2G39940.1	KRH39044	AT3G17860.1	18547396
AT2G39940.1	KRH39044	AT3G17860.1	19309455
AT2G39940.1	KRG96405	AT4G02570.1	12172031
AT2G39940.1	KRH68142	AT4G02570.1	12172031
AT2G39940.1	KRG96405	AT4G02570.1	12445118
AT2G39940.1	KRH68142	AT4G02570.1	12445118
AT2G39940.1	KRG96405	AT4G02570.1	12724535
AT2G39940.1	KRH68142	AT4G02570.1	12724535
AT2G39940.1	KRH10462	AT4G14110.1	12724535
AT2G39940.1	KRH33363	AT4G14110.1	12724535
AT2G39940.1	KRH43983	AT4G14110.1	12724535
AT2G39940.1	KRG94317	AT5G14250.1	12724535
AT2G39940.1	KRH57651	AT5G14250.1	12724535
AT2G39940.1	KRH23810	AT5G42970.1	12724535
AT2G39940.1	KRH39972	AT5G42970.1	12724535
AT2G39940.1	KRH03236	AT5G63110.1	12445118
AT2G39940.1	KRH54335	AT5G63110.1	12445118
AT2G39940.1	KRH54336	AT5G63110.1	12445118
AT2G39940.1	KRH57122	AT5G63110.1	12445118
AT2G39940.1	KRH63609	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73146	Soybean	cytosol	95.95	93.32
KRH31107	Soybean	cytosol	85.74	82.54
KRG97777	Soybean	cytosol	85.74	82.54
VIT_13s0019g03380.t01	Wine grape	cytosol	77.82	73.91
Solyc05g052620.2.1	Tomato	cytosol	70.95	66.83
Bra000156.1-P	Field mustard	cytosol	68.84	66.27
AT2G39940.1	Thale cress	cytosol	69.01	66.22
CDY24941	Canola	cytosol	68.66	66.1
Bra005000.1-P	Field mustard	cytosol	69.89	65.84
CDY20501	Canola	cytosol	69.72	65.78
CDX74819	Canola	cytosol	69.37	65.67
GSMUA_Achr6P33630_001	Banana	cytosol, mitochondrion, nucleus	65.49	63.81
CDX93223	Canola	cytosol	65.32	62.77
GSMUA_Achr5P28930_001	Banana	cytosol	61.62	62.5
GSMUA_Achr9P03690_001	Banana	cytosol	66.02	62.19
CDX93225	Canola	cytosol	64.79	61.95
CDY07041	Canola	cytosol	64.44	61.82
Bra017044.1-P	Field mustard	cytosol	64.79	60.93
Bra017045.1-P	Field mustard	cytosol	63.73	59.64
CDY07040	Canola	cytosol	63.56	59.47
GSMUA_Achr8P02350_001	Banana	cytosol	17.61	58.14
TraesCS4A01G091200.1	Wheat	cytosol	59.68	57.85
TraesCS4D01G214200.1	Wheat	cytosol	59.68	57.85
HORVU4Hr1G060950.3	Barley	cytosol	59.51	57.68
TraesCS4B01G213500.1	Wheat	cytosol	58.98	57.17
Os03t0265500-01	Rice	plasma membrane	59.15	57.05
Os05t0449500-01	Rice	cytosol	58.98	56.11
TraesCS3A01G367500.1	Wheat	cytosol	54.75	55.83
Zm00001d012338_P001	Maize	cytosol	58.45	55.7
CDY60996	Canola	endoplasmic reticulum, golgi	68.66	55.48
EER95129	Sorghum	cytosol	57.57	55.33
HORVU3Hr1G085210.2	Barley	cytosol	57.75	55.22
TraesCS3B01G399200.1	Wheat	cytosol	57.75	55.22
TraesCS3D01G360400.2	Wheat	cytosol	57.75	55.13
Zm00001d028543_P001	Maize	cytosol	57.22	54.99
Os01t0853400-01	Rice	cytosol	57.57	54.96
TraesCS1D01G278400.1	Wheat	cytosol	57.22	54.9
TraesCS1B01G288100.1	Wheat	cytosol	57.04	54.73
Zm00001d042833_P001	Maize	cytosol	57.57	54.68
TraesCS1A01G279100.1	Wheat	cytosol	56.87	54.56
Zm00001d047848_P001	Maize	cytosol	56.69	54.48
EES18318	Sorghum	cytosol	57.22	54.26
HORVU1Hr1G073230.1	Barley	cytosol	56.16	53.98
Zm00001d010082_P001	Maize	cytosol	56.87	53.92
EES01769	Sorghum	cytosol	56.51	53.86
Zm00001d038273_P001	Maize	cytosol	56.51	53.59
KRG94665	Soybean	cytosol	33.63	33.39
KRH06858	Soybean	cytosol	33.1	32.87
KRH70053	Soybean	cytosol	31.51	31.24
KRH68108	Soybean	cytosol	32.04	31.06
KRG96377	Soybean	cytosol	32.04	31.01
KRH08397	Soybean	cytosol	31.16	30.89
KRH71533	Soybean	cytosol	31.69	30.77
KRH31921	Soybean	cytosol	31.69	30.77
KRH62206	Soybean	cytosol	30.99	30.19
KRH49941	Soybean	cytosol	30.46	29.93
KRH41935	Soybean	cytosol	30.46	29.88
KRH52925	Soybean	cytosol	30.81	29.81
KRH72427	Soybean	cytosol	31.69	28.57
KRH16819	Soybean	cytosol	31.51	27.97

Protein Annotations

EMBL:ACUP02008549	EnsemblPlants:KRH14993	EnsemblPlantsGene:GLYMA_14G062100	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF6	ProteinID:KRH14993	ProteinID:KRH14993.1
SEG:seg	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0006ED8E15	UniProt:A0A0R0G9U2	MapMan:11.7.2.1.1

Description

hypothetical protein

Coordinates

chr14:+:5059451..5064529

Molecular Weight (calculated)

64604.8 Da

IEP (calculated)

5.555

GRAVY (calculated)

-0.160

Length

568 amino acids

Sequence
(BLAST)

001: MATRLSDVVL DCVMPYIHDS KDRDAVSQVC RRLYELDSLT RKHVTIALCY TTTPDRLRRR FPHLESLNLK GKPRAAMFNL IPEDWGGFVT PWVREISQYF
101: DCLKSLHFRR MIVRDSDLQV LARSRGHILQ ALKLDKCSGF STDGLYYIGR YCRNLRVLFL EESSLVENDG DWLHELALNN TVLETLNFYL TDIANVRIQD
201: LELIARNCPN LNSVKITDCE VLDLVNFFRY ASALEEFCGG SYNEESEKYS AISLPAKLSR LGLTYITKNE MPMVFPYAAL LKKLDLLYAM LDTEDHCTLI
301: QRCPNLEVLE SRNVIGDRGL EVLARCCRRL KRLRIERGDD DQGMEDEEGV VSQRGLIALS HGCPELEYLA VYVSDITNAS LEHIDREEKI TDLPLDNGVR
401: ALLRGCDKLR RFALYLRPGG LTDVGLGYIG QYSPNVRWML LGYVGETDAG LLEFSKGCPS LQKLEMRGCS FFSEYALAIA ATQLNSLRYL WVQGYGASPS
501: GRDLLAMARP YWNIELIPSR RVVVSNQQEE PVVVEHPAHI LAYYSLAGPR TDFPDTVIPL DPATYVDT

Best Arabidopsis Sequence Match ( AT2G39940.1 )
(BLAST)

001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI

Arabidopsis Description

COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.