Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94317 | Soybean | cytosol | 95.98 | 95.98 |
| VIT_14s0171g00270.t01 | Wine grape | cytosol | 77.78 | 77.59 |
| Solyc02g093920.2.1 | Tomato | cytosol | 73.76 | 72.9 |
| PGSC0003DMT400052100 | Potato | cytosol | 73.05 | 72.2 |
| GSMUA_Achr11P... | Banana | cytosol | 67.38 | 67.54 |
| Os08t0119000-01 | Rice | cytosol | 66.9 | 66.43 |
| GSMUA_AchrUn_... | Banana | cytosol | 63.83 | 65.85 |
| CDX78568 | Canola | cytosol | 65.25 | 65.56 |
| CDX85608 | Canola | cytosol | 65.25 | 64.94 |
| CDX91076 | Canola | cytosol | 65.01 | 64.55 |
| Bra023453.1-P | Field mustard | cytosol | 64.78 | 64.47 |
| Bra006246.1-P | Field mustard | cytosol | 64.07 | 64.37 |
| AT5G14250.1 | Thale cress | cytosol | 64.78 | 63.87 |
| EES13281 | Sorghum | cytosol | 64.54 | 63.64 |
| TraesCS7B01G216600.2 | Wheat | cytosol | 62.65 | 62.06 |
| TraesCS7D01G312600.2 | Wheat | cytosol | 62.41 | 61.83 |
| Zm00001d049652_P001 | Maize | cytosol | 61.94 | 61.65 |
| TraesCS7A01G315600.1 | Wheat | cytosol | 60.05 | 59.76 |
| Zm00001d035130_P001 | Maize | cytosol | 64.3 | 58.37 |
| Zm00001d028517_P001 | Maize | cytosol | 14.89 | 57.27 |
| Bra006326.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 33.57 | 56.8 |
| CDX78656 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 33.1 | 55.78 |
| HORVU7Hr1G075150.4 | Barley | mitochondrion | 62.41 | 54.21 |
| CDX70553 | Canola | mitochondrion | 44.44 | 51.51 |
| CDY26433 | Canola | mitochondrion | 35.7 | 34.32 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100783340 | MapMan:19.2.3.3.1.3 | EMBL:ACUP02002875 | InterPro:CSN3 | EnsemblPlantsGene:GLYMA_05G075400 |
| GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | UniProt:I1K1Z8 | InterPro:IPR000717 | EnsemblPlants:KRH57651 | ProteinID:KRH57651 | ProteinID:KRH57651.1 |
| InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF1 | SMART:SM00088 |
| SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI000233A0E2 | InterPro:WH_DNA-bd_sf | : | : |
Description
hypothetical protein
Coordinates
chr5:-:9318061..9332326
Molecular Weight (calculated)
47627.6 Da
IEP (calculated)
6.511
GRAVY (calculated)
-0.136
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPLEALVAQ IQGLSSSPGD LTRLHTVLKQ ADDSLRSEST RLAPILTQLD PSIHSLGFLY ILEASMTGPV TKTQAEVVVP IVTRFIGACS TEQIRLAPDK
101: FLSVCKRLKD QVMLLEAPIR GVAPLFNALR KLQASAEHLT PLHSEFLLLC LLAKCYKTGL SILDDDVFEV DQPRDLFLYC YYGGMICIGQ KRFQKALDLL
201: HNVVTAPMST INAIAVEAYK KYILVSLIRH GQFSTSLPKY SSSTAQRNLK NFCQPYVELA NSYGTGKIAE LEAYVKANAE KFESDNNLGL VKQVVSSMYK
301: RNIQRLTQTY LTLSLQDIAN TVQLNSPKEA EMHVLQMIQD GEIYATINQK DGMVRFLEDP EQYKTCEMIE HIDSSIQRIM ALSRKLTATD EQISCDQLYL
401: SKAGRERQRY DFDDFDVPQK FNV
101: FLSVCKRLKD QVMLLEAPIR GVAPLFNALR KLQASAEHLT PLHSEFLLLC LLAKCYKTGL SILDDDVFEV DQPRDLFLYC YYGGMICIGQ KRFQKALDLL
201: HNVVTAPMST INAIAVEAYK KYILVSLIRH GQFSTSLPKY SSSTAQRNLK NFCQPYVELA NSYGTGKIAE LEAYVKANAE KFESDNNLGL VKQVVSSMYK
301: RNIQRLTQTY LTLSLQDIAN TVQLNSPKEA EMHVLQMIQD GEIYATINQK DGMVRFLEDP EQYKTCEMIE HIDSSIQRIM ALSRKLTATD EQISCDQLYL
401: SKAGRERQRY DFDDFDVPQK FNV
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.