Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G216600.2 | Wheat | cytosol | 85.22 | 97.19 |
| TraesCS7D01G312600.2 | Wheat | cytosol | 84.6 | 96.49 |
| TraesCS7A01G315600.1 | Wheat | cytosol | 80.29 | 92.0 |
| Os08t0119000-01 | Rice | cytosol | 69.4 | 79.34 |
| Zm00001d049652_P001 | Maize | cytosol | 66.53 | 76.24 |
| EES13281 | Sorghum | cytosol | 66.94 | 75.99 |
| Zm00001d035130_P001 | Maize | cytosol | 66.12 | 69.1 |
| Zm00001d028517_P001 | Maize | cytosol | 14.99 | 66.36 |
| GSMUA_AchrUn_... | Banana | cytosol | 55.65 | 66.1 |
| GSMUA_Achr11P... | Banana | cytosol | 56.26 | 64.93 |
| KRH57651 | Soybean | cytosol | 54.21 | 62.41 |
| KRG94317 | Soybean | cytosol | 54.0 | 62.17 |
| VIT_14s0171g00270.t01 | Wine grape | cytosol | 53.59 | 61.56 |
| Solyc02g093920.2.1 | Tomato | cytosol | 53.18 | 60.51 |
| PGSC0003DMT400052100 | Potato | cytosol | 52.77 | 60.05 |
| Bra023453.1-P | Field mustard | cytosol | 46.61 | 53.41 |
| CDX91076 | Canola | cytosol | 46.61 | 53.29 |
| CDX85608 | Canola | cytosol | 46.2 | 52.94 |
| Bra006246.1-P | Field mustard | cytosol | 45.38 | 52.49 |
| CDX78568 | Canola | cytosol | 45.17 | 52.26 |
| AT5G14250.1 | Thale cress | cytosol | 44.76 | 50.82 |
| CDX78656 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 21.77 | 42.23 |
| Bra006326.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 21.56 | 42.0 |
| CDX70553 | Canola | mitochondrion | 30.8 | 41.1 |
| CDY26433 | Canola | mitochondrion | 25.46 | 28.18 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.3 | UniProt:A0A287WXB8 | InterPro:CSN3 | GO:GO:0000338 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 | GO:GO:0010971 |
| GO:GO:0019538 | EnsemblPlantsGene:HORVU7Hr1G075150 | EnsemblPlants:HORVU7Hr1G075150.4 | InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF01399 |
| PFscan:PS50250 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF1 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 |
| UniParc:UPI000B464EE5 | InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:433635297..433641170
Molecular Weight (calculated)
54072.8 Da
IEP (calculated)
7.454
GRAVY (calculated)
-0.234
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: RTRRLWAGRV PTKAPSAATP VSSLLLQPGE KPHRERRQTK PPNPSQGARP NPQTPSAAAA MESVEALVAH IQALSGSADE LAQLHGLLKQ ADGDALRVHS
101: AGLLPFLSHL HPGAHSLGYL YLLDSFLSSS ANLRAHAGGD LLVTVADFLT SCSVDQIRLA PDKFLNVCRV LKNEVMQLNA PIRGIAPLRA AVRKIQSSSE
201: QLTPLHAEYL MLCLLAKQYK AGLNVLEDDI FEVDQPKDLF LYCYYGGMIY IGLKKFHKAL ELLHNAVTAP MSSLNAITVE AYKKYVLVSL IQSGQVPPFP
301: KYTSSTAQRN LKNHAQIYVD VSTCYGTGSY SDLETFIQSN AEAFQTDNNL GLVKQVLSSM YKRNIQRLTQ TYLTLSLEDI ASSVQLNTPK EAEMHVLRMI
401: EDGEIYATIN QKDGMVSFNE DPEQYKSSEM VEHIDSSIQR LMALSKKLTS IDQNISCDHA FLMKVQSGRE RARFDYDDFD SVPHKYF
101: AGLLPFLSHL HPGAHSLGYL YLLDSFLSSS ANLRAHAGGD LLVTVADFLT SCSVDQIRLA PDKFLNVCRV LKNEVMQLNA PIRGIAPLRA AVRKIQSSSE
201: QLTPLHAEYL MLCLLAKQYK AGLNVLEDDI FEVDQPKDLF LYCYYGGMIY IGLKKFHKAL ELLHNAVTAP MSSLNAITVE AYKKYVLVSL IQSGQVPPFP
301: KYTSSTAQRN LKNHAQIYVD VSTCYGTGSY SDLETFIQSN AEAFQTDNNL GLVKQVLSSM YKRNIQRLTQ TYLTLSLEDI ASSVQLNTPK EAEMHVLRMI
401: EDGEIYATIN QKDGMVSFNE DPEQYKSSEM VEHIDSSIQR LMALSKKLTS IDQNISCDHA FLMKVQSGRE RARFDYDDFD SVPHKYF
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.