Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049652_P001 | Maize | cytosol | 84.98 | 93.18 |
| EES13281 | Sorghum | cytosol | 85.19 | 92.54 |
| Zm00001d028517_P001 | Maize | cytosol | 19.96 | 84.55 |
| Os08t0119000-01 | Rice | cytosol | 74.68 | 81.69 |
| TraesCS7D01G312600.2 | Wheat | cytosol | 69.74 | 76.11 |
| TraesCS7B01G216600.2 | Wheat | cytosol | 69.53 | 75.88 |
| TraesCS7A01G315600.1 | Wheat | cytosol | 66.52 | 72.94 |
| GSMUA_Achr11P... | Banana | cytosol | 61.59 | 68.01 |
| HORVU7Hr1G075150.4 | Barley | mitochondrion | 69.1 | 66.12 |
| GSMUA_AchrUn_... | Banana | cytosol | 58.15 | 66.1 |
| KRH57651 | Soybean | cytosol | 58.37 | 64.3 |
| KRG94317 | Soybean | cytosol | 57.94 | 63.83 |
| Solyc02g093920.2.1 | Tomato | cytosol | 58.37 | 63.55 |
| VIT_14s0171g00270.t01 | Wine grape | cytosol | 57.73 | 63.44 |
| PGSC0003DMT400052100 | Potato | cytosol | 57.94 | 63.08 |
| Bra006246.1-P | Field mustard | cytosol | 50.64 | 56.06 |
| CDX78568 | Canola | cytosol | 50.21 | 55.58 |
| AT5G14250.1 | Thale cress | cytosol | 50.86 | 55.24 |
| CDX91076 | Canola | cytosol | 50.43 | 55.16 |
| CDX85608 | Canola | cytosol | 50.21 | 55.06 |
| Bra023453.1-P | Field mustard | cytosol | 50.21 | 55.06 |
| CDX78656 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 25.54 | 47.41 |
| Bra006326.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 25.32 | 47.2 |
| CDX70553 | Canola | mitochondrion | 35.19 | 44.93 |
| CDY26433 | Canola | mitochondrion | 28.54 | 30.23 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.3 | UniProt:A0A1D6LEM2 | ProteinID:AQK78396.1 | InterPro:CSN3 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008180 | InterPro:IPR000717 | InterPro:PCI_dom |
| PFAM:PF01399 | PFscan:PS50250 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF1 | SMART:SM00088 | SMART:SM00753 |
| SUPFAM:SSF46785 | UniParc:UPI000843CE9C | InterPro:WH_DNA-bd_sf | EnsemblPlantsGene:Zm00001d035130 | EnsemblPlants:Zm00001d035130_P001 | EnsemblPlants:Zm00001d035130_T001 |
| SEG:seg | : | : | : | : | : |
Description
COP9 signalosome complex subunit 3
Coordinates
chr6:+:6496546..6500710
Molecular Weight (calculated)
52007.4 Da
IEP (calculated)
5.988
GRAVY (calculated)
-0.080
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MESLEALVAH IQGLSGSPEE LAHLHSLLKQ ADGEPLRAHA AALVPFLAHL SPETHSLGYI YLLDACAASA SNLSDFGGGD FLVTIAGFLT ACSADQIRLA
101: PDKCACCFFF DPQIDSNRNA LYPVTIGCRR CNLTNFDLAV RCRAVLHVCK VLKDQVMQLN MPIRGIAPLR AAVRKIQSSP EQLTPVHADY LLLCLLAKQY
201: KAGLSVLEDD IFEVDQPKDL FLYCYYGGMI YIGLKKFPKA LELLHNAVTA PMSTLNAIAV EAYKKYILVS LIVNGQVPSF PKYTSISAQR SMKNHAQIYF
301: ELSTSYSNGR YTDLETFVES NSAAFQSDNN LGLVKQVLSS MYKRNIQRLT QTYLTLSLED IARSVQLETP EDAEMHVLRM IEDGEIHATI NQKDGMVSFH
401: EDPEQYKSVE MVEHIDSSIQ RLTALSKKLA SIDENMSCDP SYLLKTGRDR GRFDYDDFDS VPHKYF
101: PDKCACCFFF DPQIDSNRNA LYPVTIGCRR CNLTNFDLAV RCRAVLHVCK VLKDQVMQLN MPIRGIAPLR AAVRKIQSSP EQLTPVHADY LLLCLLAKQY
201: KAGLSVLEDD IFEVDQPKDL FLYCYYGGMI YIGLKKFPKA LELLHNAVTA PMSTLNAIAV EAYKKYILVS LIVNGQVPSF PKYTSISAQR SMKNHAQIYF
301: ELSTSYSNGR YTDLETFVES NSAAFQSDNN LGLVKQVLSS MYKRNIQRLT QTYLTLSLED IARSVQLETP EDAEMHVLRM IEDGEIHATI NQKDGMVSFH
401: EDPEQYKSVE MVEHIDSSIQ RLTALSKKLA SIDENMSCDP SYLLKTGRDR GRFDYDDFDS VPHKYF
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.