Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57651 | Soybean | cytosol | 95.98 | 95.98 |
| VIT_14s0171g00270.t01 | Wine grape | cytosol | 77.31 | 77.12 |
| Solyc02g093920.2.1 | Tomato | cytosol | 73.29 | 72.43 |
| PGSC0003DMT400052100 | Potato | cytosol | 72.34 | 71.5 |
| GSMUA_Achr11P... | Banana | cytosol | 67.14 | 67.3 |
| Os08t0119000-01 | Rice | cytosol | 66.67 | 66.2 |
| GSMUA_AchrUn_... | Banana | cytosol | 63.12 | 65.12 |
| CDX78568 | Canola | cytosol | 63.83 | 64.13 |
| CDX91076 | Canola | cytosol | 64.07 | 63.62 |
| CDX85608 | Canola | cytosol | 63.83 | 63.53 |
| Bra023453.1-P | Field mustard | cytosol | 63.59 | 63.29 |
| EES13281 | Sorghum | cytosol | 64.07 | 63.17 |
| Bra006246.1-P | Field mustard | cytosol | 62.65 | 62.95 |
| AT5G14250.1 | Thale cress | cytosol | 62.88 | 62.0 |
| TraesCS7B01G216600.2 | Wheat | cytosol | 62.41 | 61.83 |
| TraesCS7D01G312600.2 | Wheat | cytosol | 62.17 | 61.59 |
| Zm00001d049652_P001 | Maize | cytosol | 61.7 | 61.41 |
| TraesCS7A01G315600.1 | Wheat | cytosol | 59.81 | 59.53 |
| Zm00001d035130_P001 | Maize | cytosol | 63.83 | 57.94 |
| Zm00001d028517_P001 | Maize | cytosol | 14.42 | 55.45 |
| Bra006326.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 32.39 | 54.8 |
| HORVU7Hr1G075150.4 | Barley | mitochondrion | 62.17 | 54.0 |
| CDX78656 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 31.91 | 53.78 |
| CDX70553 | Canola | mitochondrion | 44.21 | 51.23 |
| CDY26433 | Canola | mitochondrion | 34.28 | 32.95 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100800241 | MapMan:19.2.3.3.1.3 | EMBL:ACUP02011928 | InterPro:CSN3 | EnsemblPlantsGene:GLYMA_19G075700 |
| GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0019538 | UniProt:I1N7E6 | InterPro:IPR000717 | EnsemblPlants:KRG94317 | ProteinID:KRG94317 | ProteinID:KRG94317.1 |
| InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF1 | SMART:SM00088 |
| SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI000233F175 | InterPro:WH_DNA-bd_sf | : | : |
Description
hypothetical protein
Coordinates
chr19:+:27367493..27374838
Molecular Weight (calculated)
47749.6 Da
IEP (calculated)
5.826
GRAVY (calculated)
-0.157
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPLEALVAQ IQGLSSTPGD LTRLHSVLKQ ADDSLRSEST RLAPILTQLD PSIHSLGFLY ILEASMTDPV TKTQAETVVP IVTRFIGACS PEQIRLAPDK
101: FLSVCKRLKD QVMLLEAPIR GVAPLFTALR KLQVSTEHLT PLHSEFLLLC LLAKCYKTGL SILDDDVFEV DQPRDLFLYC YYGGMICIGQ KHFQKALDLL
201: HNVVTAPMST INAIAVEAYK KYILVSLIRH GQFSTSLPKY SSSTAQRNLK NFCQPYVELA NSYGTGQIEE LEAYARANAE KFESDNNLGL VNQVVSSMYK
301: RNIQRLTQTY LTLSLHDIAS TVQLNSPKEA EMHVLQMIQD GEIYATINQK DGMVRFLEDP EQYKTCEMIE HIDSSIQRIM ALSRKLTATD EQISCDQLYL
401: SKAGRERQRY DFDDFDVPQK FNI
101: FLSVCKRLKD QVMLLEAPIR GVAPLFTALR KLQVSTEHLT PLHSEFLLLC LLAKCYKTGL SILDDDVFEV DQPRDLFLYC YYGGMICIGQ KHFQKALDLL
201: HNVVTAPMST INAIAVEAYK KYILVSLIRH GQFSTSLPKY SSSTAQRNLK NFCQPYVELA NSYGTGQIEE LEAYARANAE KFESDNNLGL VNQVVSSMYK
301: RNIQRLTQTY LTLSLHDIAS TVQLNSPKEA EMHVLQMIQD GEIYATINQK DGMVRFLEDP EQYKTCEMIE HIDSSIQRIM ALSRKLTATD EQISCDQLYL
401: SKAGRERQRY DFDDFDVPQK FNI
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.