Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13242 | Soybean | cytosol | 97.3 | 97.3 |
| Zm00001d023916_P001 | Maize | cytosol | 15.83 | 87.23 |
| Zm00001d020231_P001 | Maize | cytosol | 22.39 | 85.29 |
| VIT_15s0021g01580.t01 | Wine grape | cytosol | 83.01 | 83.01 |
| Solyc01g090290.2.1 | Tomato | cytosol | 78.38 | 78.38 |
| CDX90073 | Canola | cytosol | 18.53 | 77.42 |
| AT1G02090.1 | Thale cress | cytosol | 74.9 | 74.62 |
| CDY38053 | Canola | cytosol | 74.9 | 74.05 |
| Bra032666.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 74.52 | 73.66 |
| GSMUA_Achr2P12070_001 | Banana | cytosol | 73.75 | 73.18 |
| CDY00413 | Canola | cytosol | 71.81 | 71.54 |
| CDY01302 | Canola | nucleus | 71.81 | 71.54 |
| Bra012303.1-P | Field mustard | nucleus | 71.81 | 71.54 |
| KRH01071 | Soybean | nucleus | 76.83 | 70.82 |
| GSMUA_Achr4P21630_001 | Banana | cytosol | 68.73 | 68.73 |
| Bra033219.1-P | Field mustard | cytosol | 25.1 | 68.42 |
| PGSC0003DMT400067022 | Potato | cytosol | 77.61 | 67.91 |
| Zm00001d006410_P013 | Maize | nucleus | 68.34 | 67.82 |
| KXG36255 | Sorghum | nucleus | 67.57 | 67.05 |
| Os07t0490800-01 | Rice | cytosol, plasma membrane | 31.27 | 66.94 |
| TraesCS2B01G253600.2 | Wheat | nucleus | 67.18 | 66.67 |
| Zm00001d004607_P001 | Maize | nucleus | 42.47 | 66.67 |
| TraesCS2A01G228300.1 | Wheat | nucleus | 66.8 | 66.28 |
| TraesCS2D01G239100.1 | Wheat | golgi | 66.8 | 66.28 |
| HORVU2Hr1G050230.9 | Barley | nucleus | 66.41 | 65.9 |
| Zm00001d021522_P002 | Maize | cytosol, plasma membrane | 67.18 | 62.59 |
| CDY15130 | Canola | extracellular | 27.03 | 62.5 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100801739 | MapMan:19.2.3.3.1.7 | EMBL:ACUP02008280 | EnsemblPlantsGene:GLYMA_13G187200 | GO:GO:0000338 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 | GO:GO:0019538 | UniProt:I1M0I7 | InterPro:IPR000717 |
| EnsemblPlants:KRH20583 | ProteinID:KRH20583 | ProteinID:KRH20583.1 | InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 |
| PANTHER:PTHR15350 | PANTHER:PTHR15350:SF5 | SMART:SM00088 | SMART:SM00753 | UniParc:UPI000233B952 | SEG:seg |
Description
hypothetical protein
Coordinates
chr13:+:30101456..30109644
Molecular Weight (calculated)
29734.5 Da
IEP (calculated)
4.900
GRAVY (calculated)
-0.422
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIEQKQSEL IDHFVKRASA ASDAAALSSV LVEATSHPSL FAFSEILALP NLLQLEATEN SAYLDMLRLF AHGTWNDYKS NADRLPQLIP DQILKLKQLT
101: VLTLAETYKV LPYDQLMQEL DVTNVRELED FLINECMYAG IVRGKLDQLR RCFEVQFAAG RDLRPDQLGN MIQTLSNWLS TSENMLVSIQ EKIKWADAMS
201: EIDKKHRKDV EEKVEEVKKS IFKADIDFRG HEEICSESGG VMDYEEDRSR PKRRRHPIS
101: VLTLAETYKV LPYDQLMQEL DVTNVRELED FLINECMYAG IVRGKLDQLR RCFEVQFAAG RDLRPDQLGN MIQTLSNWLS TSENMLVSIQ EKIKWADAMS
201: EIDKKHRKDV EEKVEEVKKS IFKADIDFRG HEEICSESGG VMDYEEDRSR PKRRRHPIS
001: MDIEQKQAEI IDQLVKRAST CKSEALGPLI IEATSHPSLF AFSEILALPN VAQLEGTTDS VYLDLLRLFA HGTWGDYKCN ATRLPHLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
Arabidopsis Description
CSN7COP9 signalosome complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q94JU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.