CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91898
EER92695
EER92981
EES13281
EES14305
KXG27287
KXG34696
OQU81583

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02090.1	KXG27287	AT1G71230.1	11742986
AT1G02090.1	KXG34696	AT3G57290.1	11029466
AT1G02090.1	EER92981	AT3G61140.1	10330469
AT1G02090.1	EER92981	AT3G61140.1	11742986
AT1G02090.1	EER92981	AT3G61140.1	12615944
AT1G02090.1	OQU81583	AT4G14110.1	10330469
AT1G02090.1	OQU81583	AT4G14110.1	12615944
AT1G02090.1	EES14305	AT4G26430.1	11742986
AT1G02090.1	EES13281	AT5G14250.1	11742986
AT1G02090.1	EES13281	AT5G14250.1	12615944
AT1G02090.1	EER91898	AT5G25780.1	11029466
AT1G02090.1	EER92695	AT5G42970.1	11854419
AT1G02090.1	EER92695	AT5G42970.1	12615944
AT1G02090.1	EES14305	AT5G56280.1	11701877
AT1G02090.1	EES14305	AT5G56280.1	11742986
AT1G02090.1	EES14305	AT5G56280.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006410_P013	Maize	nucleus	96.93	96.93
TraesCS2D01G239100.1	Wheat	golgi	94.25	94.25
TraesCS2B01G253600.2	Wheat	nucleus	94.25	94.25
TraesCS2A01G228300.1	Wheat	nucleus	94.25	94.25
HORVU2Hr1G050230.9	Barley	nucleus	91.95	91.95
Zm00001d004607_P001	Maize	nucleus	56.7	89.7
Zm00001d021522_P002	Maize	cytosol, plasma membrane	95.4	89.57
Os07t0490800-01	Rice	cytosol, plasma membrane	37.93	81.82
GSMUA_Achr2P12070_001	Banana	cytosol	75.48	75.48
GSMUA_Achr4P21630_001	Banana	cytosol	71.65	72.2
CDX90073	Canola	cytosol	16.86	70.97
KRH13242	Soybean	cytosol	67.82	68.34
VIT_15s0021g01580.t01	Wine grape	cytosol	67.82	68.34
KRH20583	Soybean	cytosol	67.05	67.57
Solyc01g090290.2.1	Tomato	cytosol	64.37	64.86
AT1G02090.1	Thale cress	cytosol	62.07	62.31
CDY38053	Canola	cytosol	60.92	60.69
CDY00413	Canola	cytosol	60.15	60.38
Bra012303.1-P	Field mustard	nucleus	60.15	60.38
Bra032666.1-P	Field mustard	cytoskeleton, cytosol, nucleus	60.54	60.31
Bra033219.1-P	Field mustard	cytosol	21.84	60.0
CDY01302	Canola	nucleus	59.0	59.23
CDY15130	Canola	extracellular	24.14	56.25
PGSC0003DMT400067022	Potato	cytosol	63.22	55.74
VIT_02s0234g00120.t01	Wine grape	cytosol	52.49	52.9
KRH01071	Soybean	nucleus	56.7	52.67

Protein Annotations

EnsemblPlants:KXG36255	EnsemblPlantsGene:SORBI_3002G306600	Gene3D:1.25.40.570	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000717	InterPro:PCI_dom	ncoils:Coil	PANTHER:PTHR15350	PANTHER:PTHR15350:SF5	PFAM:PF01399
PFscan:PS50250	ProteinID:KXG36255	ProteinID:KXG36255.1	SEG:seg	SMART:SM00088	SMART:SM00753
UniParc:UPI0001C80E45	UniProt:A0A1B6QEB9	MapMan:19.2.3.3.1.7	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:68127962..68132691

Molecular Weight (calculated)

29389.1 Da

IEP (calculated)

4.955

GRAVY (calculated)

-0.368

Length

261 amino acids

Sequence
(BLAST)

001: MAMDAERRQA ELIAQFSAQA AALSSAPQLA ALVLEATSHP ALFAFSELLT LPALSKLAGT QYASSLDLLR LFAYGTLKDY KSNSGSLPAL LPDQVRKLKQ
101: LSVLTLAEST KILPYDQLMQ ELDVSNVREL EDFLINECMY SGIVRGKLDQ LRRCFEVQFA AGRDLTPDQL NNMIETLSDW LGTSDSLLHQ IQEKIKWADT
201: MSEVNKKHQK EFEDRVEEAK KSIKQADIDL RGHDDFLSES GGIMDFEEDR VRPKRRRQPP A

Best Arabidopsis Sequence Match ( AT1G02090.1 )
(BLAST)

001: MDIEQKQAEI IDQLVKRAST CKSEALGPLI IEATSHPSLF AFSEILALPN VAQLEGTTDS VYLDLLRLFA HGTWGDYKCN ATRLPHLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR

Arabidopsis Description

CSN7COP9 signalosome complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q94JU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.