CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92695
EER92981
EER93338
EER97436
EES00131
EES13281
EES13928
KXG27287
KXG35906
KXG36255
OQU81583

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14110.1	KXG36255	AT1G02090.1	10330469
AT4G14110.1	KXG36255	AT1G02090.1	11742986
AT4G14110.1	KXG36255	AT1G02090.1	12615944
AT4G14110.1	KXG27287	AT1G22920.1	11701877
AT4G14110.1	KXG27287	AT1G22920.1	11742986
AT4G14110.1	EES00131	AT1G64280.1	19490895
AT4G14110.1	KXG27287	AT1G71230.1	11742986
AT4G14110.1	KXG27287	AT1G71230.1	21798944
AT4G14110.1	EER97436	AT3G13550.1	11877375
AT4G14110.1	EES13928	AT3G56150.1	11029466
AT4G14110.1	KXG35906	AT3G56150.1	11029466
AT4G14110.1	EER92981	AT3G61140.1	11701877
AT4G14110.1	EER92981	AT3G61140.1	12615944
AT4G14110.1	EER92981	AT3G61140.1	9811788
AT4G14110.1	OQU81583	AT4G14110.1	12615944
AT4G14110.1	EES13281	AT5G14250.1	11742986
AT4G14110.1	EES13281	AT5G14250.1	12615944
AT4G14110.1	EER92695	AT5G42970.1	12615944
AT4G14110.1	EER93338	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025407_P001	Maize	cytosol	91.84	91.84
Zm00001d003685_P001	Maize	extracellular	91.84	91.84
Os04t0428900-01	Rice	cytosol	80.61	80.61
TraesCS2A01G301900.1	Wheat	golgi	79.08	79.08
HORVU2Hr1G074740.2	Barley	cytosol	70.92	70.92
HORVU2Hr1G074780.1	Barley	mitochondrion, plastid	80.1	70.72
GSMUA_Achr2P20500_001	Banana	cytosol	63.78	63.45
Solyc01g104600.2.1	Tomato	cytosol	59.18	58.88
PGSC0003DMT400076584	Potato	cytosol	58.16	57.87
KRH43983	Soybean	cytosol	57.65	57.36
KRH10462	Soybean	cytosol	56.63	56.35
VIT_12s0055g00390.t01	Wine grape	cytosol	56.12	55.84
Bra038444.1-P	Field mustard	cytosol	56.12	55.84
CDY12369	Canola	cytosol	55.61	55.33
CDY27125	Canola	cytosol	55.1	54.82
CDY01192	Canola	cytosol	53.57	53.3
KRH33363	Soybean	cytosol	48.98	52.75
AT4G14110.1	Thale cress	cytosol	52.55	52.28
CDY12734	Canola	cytosol	54.59	49.08
Bra032760.1-P	Field mustard	cytosol	54.08	47.96
TraesCS2D01G300400.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	77.04	46.75

Protein Annotations

Gene3D:1.25.40.990	MapMan:19.2.3.3.1.8	EntrezGene:8073994	UniProt:A0A1Z5RCT9	InterPro:COP9_CSN8	InterPro:CSN8_PSD8_EIF3K
GO:GO:0000338	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009416	GO:GO:0009628
GO:GO:0009719	GO:GO:0009753	GO:GO:0009987	GO:GO:0010387	GO:GO:0016043	GO:GO:0019538
InterPro:IPR000717	EnsemblPlants:OQU81583	ProteinID:OQU81583	ProteinID:OQU81583.1	InterPro:PCI_dom	PFAM:PF10075
PFscan:PS50250	PANTHER:PTHR13339	EnsemblPlantsGene:SORBI_3006G079900	UniParc:UPI0001A87104	RefSeq:XP_002447838.1	:

Description

hypothetical protein

Coordinates

chr6:-:44828343..44831646

Molecular Weight (calculated)

21996.1 Da

IEP (calculated)

5.241

GRAVY (calculated)

-0.126

Length

196 amino acids

Sequence
(BLAST)

001: MDLSAVQAAL SDKSYSALAP LCDELLLQVA AKGAITDEWP YSVHLLAHLY INDLNSARFF WKSLPQEVKD TRPELAAVWR IGQCLWNRDY AGVNTAAQGF
101: EWGPDLADFI TAFLESYRQR IFKLLTSAYS TISVADVAHF MGMSEEDVTN YAVQNSWSLD AATGMLTVKK PKAQTNQKLD SSKLQRLTEC VFHLEH

Best Arabidopsis Sequence Match ( AT4G14110.1 )
(BLAST)

001: MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH

Arabidopsis Description

CSN8COP9 signalosome complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:P43255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.