CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92695
EER92981
EES02774
EES13281
EES13928
KXG27287
KXG35906
KXG36255
OQU81583

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61140.1	KXG36255	AT1G02090.1	10330469
AT3G61140.1	KXG36255	AT1G02090.1	11742986
AT3G61140.1	KXG36255	AT1G02090.1	11854419
AT3G61140.1	KXG36255	AT1G02090.1	12615944
AT3G61140.1	KXG27287	AT1G22920.1	12615944
AT3G61140.1	KXG27287	AT1G22920.1	9811788
AT3G61140.1	KXG27287	AT1G71230.1	9811788
AT3G61140.1	EES02774	AT2G26990.1	11854419
AT3G61140.1	EES02774	AT2G26990.1	12615944
AT3G61140.1	EES13928	AT3G56150.1	11029466
AT3G61140.1	KXG35906	AT3G56150.1	11029466
AT3G61140.1	EER92981	AT3G61140.1	12615944
AT3G61140.1	OQU81583	AT4G14110.1	11701877
AT3G61140.1	OQU81583	AT4G14110.1	12615944
AT3G61140.1	OQU81583	AT4G14110.1	9811788
AT3G61140.1	EES13281	AT5G14250.1	12615944
AT3G61140.1	EER92695	AT5G42970.1	11854419
AT3G61140.1	EER92695	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027359_P001	Maize	cytosol, extracellular	95.71	95.28
Os03t0116500-01	Rice	cytosol	87.58	87.98
Zm00001d048502_P002	Maize	cytosol	33.41	86.55
HORVU0Hr1G029090.1	Barley	endoplasmic reticulum	21.44	84.82
TraesCS5A01G525900.1	Wheat	cytosol, unclear	84.65	84.08
TraesCS4D01G350200.1	Wheat	cytosol, golgi	84.42	83.86
TraesCS4B01G356500.1	Wheat	cytosol	84.42	83.67
VIT_15s0048g01980.t01	Wine grape	cytosol	71.78	72.11
GSMUA_Achr11P...	Banana	cytosol	72.91	71.78
PGSC0003DMT400071374	Potato	cytosol	71.11	71.59
Solyc01g091650.2.1	Tomato	cytosol	70.88	71.36
GSMUA_Achr11P...	Banana	cytosol	72.46	71.02
KRH65148	Soybean	cytosol	70.43	70.27
GSMUA_Achr8P11930_001	Banana	cytosol	72.01	70.26
KRH48239	Soybean	cytosol	69.75	69.28
AT3G61140.1	Thale cress	cytosol	67.04	67.35
HORVU6Hr1G027500.11	Barley	plastid	42.89	66.9
HORVU4Hr1G086160.1	Barley	cytosol	82.84	66.73
Bra007576.1-P	Field mustard	cytosol	65.46	66.51
CDY52333	Canola	cytosol	66.59	66.44
CDY65304	Canola	cytosol	66.37	66.37
CDY45683	Canola	cytosol	67.72	66.23
CDX67853	Canola	cytosol	67.04	65.56
Bra003438.1-P	Field mustard	cytosol	67.04	65.56
OQU85258	Sorghum	cytosol	19.19	21.85
KXG26586	Sorghum	cytosol	18.96	21.65

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.1	EntrezGene:8077997	UniProt:C5X110	InterPro:CSN1	ncoils:Coil
EnsemblPlants:EER92981	ProteinID:EER92981	ProteinID:EER92981.1	GO:GO:0000003	GO:GO:0000338	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006461
GO:GO:0006464	GO:GO:0006950	GO:GO:0006972	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008180	GO:GO:0009628	GO:GO:0009646	GO:GO:0009651	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	InterPro:IPR000717	InterPro:PCI_dom
PFAM:PF01399	PFAM:PF10602	PFscan:PS50250	PANTHER:PTHR14145	PANTHER:PTHR14145:SF2	InterPro:Rpn7/CSN1
SMART:SM00088	SMART:SM00753	EnsemblPlantsGene:SORBI_3001G532100	SUPFAM:SSF46785	unigene:Sbi.1184	UniParc:UPI0001A82669
InterPro:WH_DNA-bd_sf	RefSeq:XP_002465983.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:79532289..79536956

Molecular Weight (calculated)

49659.6 Da

IEP (calculated)

7.142

GRAVY (calculated)

-0.238

Length

443 amino acids

Sequence
(BLAST)

001: MDVEGEVPAA AAAAVANGLG GAEEASAAPV SAEQLDVEAY AAQYSGRTRL ARLLFIADRC GVEAMQLEAL RMAYDEIKRG EDVQLHRDVA AKIGGRLGPR
101: FGLDQAWVDT VTRRADQRKE KLENELNGYR TNLIKESIRM GYNDIGDFFY AHGQLSDAFK SYIRTRDYCT TSKHIVQMCM NVILVSIELG QYAHVSNYVS
201: KAEQTPDSLD PVIVAKLKAA AGLANLETKK YKFAARKFVE TGIELGNNYS EVIAPQDVAV YGALCALASF DRSDLKSKVI DNINFRNFLE LVPEVRELVN
301: DFYASRYGSC LGHLEKLKPN LLLDIHLHEH VETLYMDIRH KAIIQYTLPF ISVDLNLMAT AFKTSVSMLE KELAALITEN KIQARIDSHN KILYARHADQ
401: RNATFQRVLQ TGNDFERDVK SMLLRANLLK HDYIQKASGP RKM

Best Arabidopsis Sequence Match ( AT3G61140.1 )
(BLAST)

001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L

Arabidopsis Description

CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.