CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017117_P001	Maize	plasma membrane	98.2	98.2
TraesCS6D01G195300.1	Wheat	golgi, unclear	91.52	90.13
KXG26586	Sorghum	cytosol	89.72	89.95
TraesCS6B01G242700.1	Wheat	cytosol	91.26	89.87
TraesCS6A01G212300.1	Wheat	cytosol	91.77	88.81
GSMUA_Achr8P16370_001	Banana	cytosol	84.83	85.49
GSMUA_Achr6P12080_001	Banana	cytosol	84.32	84.97
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	91.77	84.8
KRH03906	Soybean	nucleus	82.01	82.64
VIT_17s0000g10250.t01	Wine grape	cytosol	81.75	82.38
GSMUA_Achr10P...	Banana	cytosol	81.49	82.12
CDX92654	Canola	cytosol	81.23	81.65
PGSC0003DMT400062214	Potato	cytosol	80.98	81.61
Solyc07g009140.2.1	Tomato	nucleus	80.98	81.61
CDY34315	Canola	cytosol	80.72	81.14
CDY03414	Canola	cytosol	80.72	81.14
Bra013838.1-P	Field mustard	cytosol	80.72	81.14
KRH57185	Soybean	cytosol	79.95	80.57
AT4G24820.1	Thale cress	cytosol	79.95	80.36
KRH57190	Soybean	cytosol	79.18	80.21
CDY08956	Canola	extracellular, golgi	56.3	65.57
CDY34374	Canola	nucleus	17.74	55.65
PGSC0003DMT400062212	Potato	cytosol	14.14	38.46
EER92981	Sorghum	cytosol	21.85	19.19

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.6	EntrezGene:8070615	UniProt:A0A1Z5RNH6	ncoils:Coil	GO:GO:0003674
GO:GO:0008150	GO:GO:0030234	GO:GO:0050790	InterPro:IPR000717	EnsemblPlants:OQU85258	ProteinID:OQU85258
ProteinID:OQU85258.1	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250	InterPro:PSMD6
PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753	EnsemblPlantsGene:SORBI_3004G204800
SUPFAM:SSF46785	UniParc:UPI0001A85E40	InterPro:WH_DNA-bd_sf	RefSeq:XP_002454130.1	:	:

Description

hypothetical protein

Coordinates

chr4:-:55622304..55625579

Molecular Weight (calculated)

44315.4 Da

IEP (calculated)

5.534

GRAVY (calculated)

-0.112

Length

389 amino acids

Sequence
(BLAST)

001: MDGGAGEEGK QERHLVLAHK LFLLSHPAVD DLSKVALRAE VLDTVKSDDM ATLFESLVTA GVLEADAALL AEMRGRIDEE IRKLDEKIAD AEENLGESEV
101: REAHLAKSLY FIRVGEKEKA LEQLKVTEGK TVAVGQKMDL VFHTLQIGFF YMDFDLISKS IEKAKNLFEE GGDWERKNRL KVYEGLYCMA TRNFKKAASL
201: FLDSISTFTT YELFPYDTFI FYTVLTSIIT LDRVSLKQKV VDAPEILAVI GKVPHLSEFL NSLYNCQYKS FFVAFSGLTE QIKLDRYLQP HFRYYMREVR
301: TVVYSQFLES YKSVTMEAMA TAFGVSVDFI DQELSRFIAA GKLHCKIDKV AGVLETNRPD ERNAFYQATI KQGDFLLNRI QKLSRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.