CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03414	Canola	cytosol	98.45	98.45
CDY34315	Canola	cytosol	98.19	98.19
VIT_17s0000g10250.t01	Wine grape	cytosol	85.27	85.49
CDY34374	Canola	nucleus	27.39	85.48
KRH03906	Soybean	nucleus	84.24	84.46
GSMUA_Achr8P16370_001	Banana	cytosol	83.72	83.94
GSMUA_Achr6P12080_001	Banana	cytosol	83.46	83.68
KRH57190	Soybean	cytosol	82.95	83.59
KRH57185	Soybean	cytosol	82.95	83.16
GSMUA_Achr10P...	Banana	cytosol	82.43	82.64
Solyc07g009140.2.1	Tomato	nucleus	81.91	82.12
Zm00001d017117_P001	Maize	plasma membrane	81.91	81.49
Os04t0485000-01	Rice	plasma membrane	81.91	81.49
CDY08956	Canola	extracellular, golgi	70.28	81.44
OQU85258	Sorghum	cytosol	81.65	81.23
HORVU2Hr1G083860.1	Barley	cytosol	80.88	80.67
TraesCS2A01G320800.1	Wheat	cytosol	80.62	80.41
TraesCS2B01G361900.1	Wheat	golgi, plastid	80.62	80.41
TraesCS2D01G341500.1	Wheat	golgi, unclear	80.62	80.41
KXG26586	Sorghum	cytosol	79.84	79.64
TraesCS6D01G195300.1	Wheat	golgi, unclear	80.88	79.24
TraesCS6B01G242700.1	Wheat	cytosol	80.62	78.99
TraesCS6A01G212300.1	Wheat	cytosol	81.14	78.11
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	80.88	74.35
HORVU0Hr1G004970.2	Barley	cytosol	74.42	72.91
Zm00001d003257_P002	Maize	plastid	75.19	56.29
PGSC0003DMT400062212	Potato	cytosol	14.99	40.56
CDX67853	Canola	cytosol	19.64	16.78
CDY45683	Canola	cytosol	19.64	16.78
CDY65304	Canola	cytosol	19.12	16.7
CDY52333	Canola	cytosol	19.12	16.67
CDX75945	Canola	cytosol	12.92	13.3
CDX79636	Canola	cytosol, nucleus, peroxisome	14.73	12.08

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.6	EnsemblPlants:CDX92654	ProteinID:CDX92654	ProteinID:CDX92654.1	ncoils:Coil
GO:GO:0003674	GO:GO:0008150	GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00154465001	InterPro:IPR000717	InterPro:PCI_dom
PFAM:PF01399	PFAM:PF10602	PFscan:PS50250	InterPro:PSMD6	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1
InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0004EF2FDE	InterPro:WH_DNA-bd_sf

Description

BnaC07g39120D

Coordinates

chrLK031873:-:205017..207671

Molecular Weight (calculated)

44166.2 Da

IEP (calculated)

5.229

GRAVY (calculated)

-0.128

Length

387 amino acids

Sequence
(BLAST)

001: MDGGAEGTQQ PHLVLAHKLF LLTHPDVQDI EKVQLKSEVL DSIKSDGMAP LYETLAASSV LELDQSLLDS MRANNEEELK KLDDKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDLVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAEQI KFDRYLNPHF RFYMREVRTV
301: VYSQFLESYK SVTVDAMANA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.