Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67853 | Canola | cytosol | 98.45 | 98.45 |
| CDY52333 | Canola | cytosol | 89.62 | 91.44 |
| CDY65304 | Canola | cytosol | 89.18 | 91.2 |
| AT3G61140.1 | Thale cress | cytosol | 88.08 | 90.48 |
| Solyc01g091650.2.1 | Tomato | cytosol | 76.16 | 78.41 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 76.16 | 78.23 |
| PGSC0003DMT400071374 | Potato | cytosol | 75.72 | 77.95 |
| KRH65148 | Soybean | cytosol | 74.83 | 76.35 |
| KRH48239 | Soybean | cytosol | 74.83 | 76.01 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 17.66 | 71.43 |
| Os03t0116500-01 | Rice | cytosol | 67.77 | 69.61 |
| EER92981 | Sorghum | cytosol | 66.23 | 67.72 |
| TraesCS1D01G187600.1 | Wheat | cytosol | 57.17 | 67.62 |
| GSMUA_Achr11P... | Banana | cytosol | 67.33 | 67.48 |
| Zm00001d027359_P001 | Maize | cytosol, extracellular | 65.56 | 66.74 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 66.89 | 66.74 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 65.34 | 66.37 |
| GSMUA_Achr11P... | Banana | cytosol | 65.56 | 66.0 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 65.12 | 66.0 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 64.9 | 65.92 |
| TraesCS1A01G188800.1 | Wheat | cytosol | 61.37 | 63.76 |
| TraesCS1B01G196500.2 | Wheat | cytosol | 61.81 | 62.36 |
| HORVU1Hr1G048620.1 | Barley | plastid | 62.03 | 57.7 |
| HORVU6Hr1G027500.11 | Barley | plastid | 34.44 | 54.93 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 62.91 | 51.82 |
| Zm00001d048502_P002 | Maize | cytosol | 19.43 | 51.46 |
| TraesCS5D01G238500.1 | Wheat | cytosol | 32.45 | 44.14 |
| TraesCS7B01G257700.1 | Wheat | plastid | 38.41 | 25.48 |
| CDX75945 | Canola | cytosol | 20.97 | 25.27 |
| CDY34315 | Canola | cytosol | 16.78 | 19.64 |
| CDY03414 | Canola | cytosol | 16.78 | 19.64 |
| CDX92654 | Canola | cytosol | 16.78 | 19.64 |
| CDY08956 | Canola | extracellular, golgi | 11.48 | 15.57 |
| CDY34374 | Canola | nucleus | 3.31 | 12.1 |
| CDX79636 | Canola | cytosol, nucleus, peroxisome | 11.92 | 11.44 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.1 | UniProt:A0A078I966 | EnsemblPlants:CDY45683 | ProteinID:CDY45683 | ProteinID:CDY45683.1 |
| InterPro:CSN1 | ncoils:Coil | GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 |
| GO:GO:0010388 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00082468001 | InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF01399 |
| PFAM:PF10602 | PFscan:PS50250 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 | InterPro:Rpn7/CSN1 | SMART:SM00088 |
| SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0004EE9E85 | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
BnaCnng13480DBnaCnng13480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I966]
Coordinates
chrLK032633:+:59845..63178
Molecular Weight (calculated)
51817.1 Da
IEP (calculated)
7.364
GRAVY (calculated)
-0.395
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDEESSGP MMEMCTNGGG EETSNRRPII SGEPLDIEAY ASLYKGRTKI MRLLFIASHC GGNQTMQLEA LRMAYDEIKK GENTQLFRDV VNRINGRLGD
101: KYKMDSAWCE SVDRRAEQKK GRLENELSSY RTNLIKESIR MGHNDFGDFY YACGLLSDAF KNYVRTRDYC TTAKHIIHMC MNAILVSIEM GQFTHVSSYV
201: NKAEQNPETL DPFVAAKLRC ASGLAHLELK KYKLAARKFL DVSPELGNSY NEVIAPQDVA TYGGLCALAS FDRSELKAFI PLRFFSLVAK VIDNINFRDF
301: LELVPEVREL INDFYSSRYA SCLEYLGSLR ANLLLDIHLH DHVDTLYDQI RKKALIQYTL PFVSVDLSRM ADAFKTSVSG LEKELEALIT DNQIQARIDS
401: HNKILYARHA DQRNATFQKV LQMGNEFDRD VRSMMLRANL LKHEYHARAG RNH
101: KYKMDSAWCE SVDRRAEQKK GRLENELSSY RTNLIKESIR MGHNDFGDFY YACGLLSDAF KNYVRTRDYC TTAKHIIHMC MNAILVSIEM GQFTHVSSYV
201: NKAEQNPETL DPFVAAKLRC ASGLAHLELK KYKLAARKFL DVSPELGNSY NEVIAPQDVA TYGGLCALAS FDRSELKAFI PLRFFSLVAK VIDNINFRDF
301: LELVPEVREL INDFYSSRYA SCLEYLGSLR ANLLLDIHLH DHVDTLYDQI RKKALIQYTL PFVSVDLSRM ADAFKTSVSG LEKELEALIT DNQIQARIDS
401: HNKILYARHA DQRNATFQKV LQMGNEFDRD VRSMMLRANL LKHEYHARAG RNH
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.