Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035336.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY61016 | Canola | cytosol | 99.24 | 99.24 |
| CDX71533 | Canola | cytosol | 95.97 | 95.97 |
| CDY22374 | Canola | cytosol | 95.97 | 95.97 |
| AT5G42970.1 | Thale cress | cytosol | 93.2 | 93.2 |
| VIT_18s0001g12250.t01 | Wine grape | cytosol | 84.38 | 84.38 |
| KRH39972 | Soybean | cytosol | 83.12 | 83.12 |
| KRH23810 | Soybean | cytosol | 82.87 | 82.87 |
| GSMUA_Achr9P19410_001 | Banana | cytosol | 82.87 | 82.46 |
| HORVU4Hr1G070980.1 | Barley | cytosol | 82.87 | 82.46 |
| TraesCS4B01G262600.1 | Wheat | golgi | 82.87 | 82.46 |
| TraesCS4D01G262700.1 | Wheat | cytosol, nucleus, plastid | 82.62 | 82.21 |
| Solyc04g080160.2.1 | Tomato | cytosol | 82.12 | 82.12 |
| Os03t0197400-01 | Rice | cytosol, nucleus, plastid | 82.37 | 81.95 |
| PGSC0003DMT400013225 | Potato | cytosol | 81.86 | 81.86 |
| TraesCS4A01G041600.1 | Wheat | cytosol, nucleus, plastid | 82.12 | 81.7 |
| EER92695 | Sorghum | cytosol, nucleus, plastid | 82.12 | 81.7 |
| GSMUA_Achr8P31220_001 | Banana | cytosol | 76.83 | 79.84 |
| Zm00001d028143_P002 | Maize | cytosol, nucleus, plastid | 82.37 | 74.49 |
| VIT_12s0035g01450.t01 | Wine grape | mitochondrion | 32.24 | 73.14 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:19.2.3.3.1.4 | EnsemblPlants:CDY02426 | ProteinID:CDY02426 | ProteinID:CDY02426.1 | InterPro:CSN4 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008180 | EnsemblPlantsGene:GSBRNA2T00114029001 |
| InterPro:IPR000717 | InterPro:IPR036388 | InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 | PANTHER:PTHR10855 |
| PANTHER:PTHR10855:SF2 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI000253E5FD | InterPro:WH-like_DNA-bd_sf |
| InterPro:WH_DNA-bd_sf | : | : | : | : | : |
Description
BnaA02g23350D
Coordinates
chrLK031934:-:1019337..1022281
Molecular Weight (calculated)
45061.0 Da
IEP (calculated)
4.743
GRAVY (calculated)
-0.253
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEALRNASA ISDQRQKIEQ YKLILSSVIS SNDLLQSKHF IDHILSDDVP LVVSRQLLQS FAQELGRLEA ETQKEIALFT LTQIQPRVVS FEEQALVIRE
101: KLAALYESEQ EWSRAAQMLS GIDLDSGMRA VDENFKLSKC IQIARLYLED DDAVNAETYI NKASFLVSSS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRH IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRKPEIDAF AEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLGID PIKAEKIASN MICQDRMRGS IDQEEAVIHF EDDIEELQQW DHQISGVCQA LNDILDGMAK KGLPVPV
101: KLAALYESEQ EWSRAAQMLS GIDLDSGMRA VDENFKLSKC IQIARLYLED DDAVNAETYI NKASFLVSSS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRH IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRKPEIDAF AEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLGID PIKAEKIASN MICQDRMRGS IDQEEAVIHF EDDIEELQQW DHQISGVCQA LNDILDGMAK KGLPVPV
001: MDEALTNASA IGDQRQKIEQ YKLILSSVLS SNDLLQAQRF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIAQFT LTQIQPRVVS FEEQALVIRE
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV
Arabidopsis Description
CSN4At5g42970 [Source:UniProtKB/TrEMBL;Acc:Q1H5B6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.