Factsheet for VIT_18s0001g12250.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_06s0004g00730.t01
VIT_08s0040g00430.t01
VIT_10s0003g03710.t01
VIT_11s0016g01990.t01
VIT_12s0035g01450.t01
VIT_12s0055g00390.t01
VIT_13s0019g03380.t01
VIT_14s0171g00270.t01
VIT_15s0021g01580.t01
VIT_15s0048g01980.t01
VIT_18s0001g12250.t01
VIT_19s0015g01950.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42970.1	VIT_15s0021g01580.t01	AT1G02090.1	11742986
AT5G42970.1	VIT_15s0021g01580.t01	AT1G02090.1	11854419
AT5G42970.1	VIT_15s0021g01580.t01	AT1G02090.1	12615944
AT5G42970.1	VIT_03s0038g04360.t01	AT1G22920.1	12615944
AT5G42970.1	VIT_11s0016g01990.t01	AT1G64280.1	19490895
AT5G42970.1	VIT_03s0038g04360.t01	AT1G71230.1	11742986
AT5G42970.1	VIT_08s0040g00430.t01	AT2G26990.1	12615944
AT5G42970.1	VIT_13s0019g03380.t01	AT2G39940.1	12724535
AT5G42970.1	VIT_06s0004g00730.t01	AT3G13550.1	11877375
AT5G42970.1	VIT_15s0048g01980.t01	AT3G61140.1	11854419
AT5G42970.1	VIT_15s0048g01980.t01	AT3G61140.1	12615944
AT5G42970.1	VIT_12s0055g00390.t01	AT4G14110.1	11854419
AT5G42970.1	VIT_12s0055g00390.t01	AT4G14110.1	12615944
AT5G42970.1	VIT_14s0171g00270.t01	AT5G14250.1	11742986
AT5G42970.1	VIT_14s0171g00270.t01	AT5G14250.1	12615944
AT5G42970.1	VIT_14s0171g00270.t01	AT5G14250.1	12724535
AT5G42970.1	VIT_12s0035g01450.t01	AT5G42970.1	12615944
AT5G42970.1	VIT_18s0001g12250.t01	AT5G42970.1	12615944
AT5G42970.1	VIT_10s0003g03710.t01	AT5G46210.1	16844902
AT5G42970.1	VIT_19s0015g01950.t01	AT5G56280.1	11701877
AT5G42970.1	VIT_19s0015g01950.t01	AT5G56280.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39972	Soybean	cytosol	92.7	92.7
KRH23810	Soybean	cytosol	92.44	92.44
Solyc04g080160.2.1	Tomato	cytosol	90.43	90.43
PGSC0003DMT400013225	Potato	cytosol	90.18	90.18
GSMUA_Achr9P19410_001	Banana	cytosol	87.15	86.72
Os03t0197400-01	Rice	cytosol, nucleus, plastid	86.4	85.96
TraesCS4D01G262700.1	Wheat	cytosol, nucleus, plastid	86.15	85.71
EER92695	Sorghum	cytosol, nucleus, plastid	86.15	85.71
AT5G42970.1	Thale cress	cytosol	85.64	85.64
GSMUA_Achr8P31220_001	Banana	cytosol	82.37	85.6
TraesCS4B01G262600.1	Wheat	golgi	85.89	85.46
HORVU4Hr1G070980.1	Barley	cytosol	85.89	85.46
TraesCS4A01G041600.1	Wheat	cytosol, nucleus, plastid	85.39	84.96
Bra033654.1-P	Field mustard	cytosol	84.38	84.38
CDY22374	Canola	cytosol	84.38	84.38
CDY02426	Canola	cytosol	84.38	84.38
Bra035336.1-P	Field mustard	cytosol	84.38	84.38
CDY61016	Canola	cytosol	84.13	84.13
CDX71533	Canola	cytosol	84.13	84.13
VIT_12s0035g01450.t01	Wine grape	mitochondrion	36.78	83.43
Zm00001d028143_P002	Maize	cytosol, nucleus, plastid	86.15	77.9

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100254062	wikigene:100254062	MapMan:19.2.3.3.1.4	EMBL:AM468837	ProteinID:CAN77214
ProteinID:CAN77214.1	ProteinID:CBI19673	ProteinID:CBI19673.3	InterPro:CSN4	UniProt:E0CQ27	EMBL:FN595227
GO:GO:0000338	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0008180	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0019784	InterPro:IPR000717
InterPro:IPR036388	EntrezGene:LOC100254062	wikigene:LOC100254062	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250
PANTHER:PTHR10855	PANTHER:PTHR10855:SF2	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI00015C7F67
ArrayExpress:VIT_18s0001g12250	EnsemblPlantsGene:VIT_18s0001g12250	EnsemblPlants:VIT_18s0001g12250.t01	unigene:Vvi.11429	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
RefSeq:XP_002283011	RefSeq:XP_002283011.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:+:10435490..10445249

Molecular Weight (calculated)

45181.4 Da

IEP (calculated)

4.830

GRAVY (calculated)

-0.179

Length

397 amino acids

Sequence
(BLAST)

001: MDSAFASASA ISDQRQKIEQ YKLILSSVIT SNDIAQARKF IDHMLSDDVP LVVSRQLLQI FAQELGRLKP EAQKEIAHYT LTQIQPRCVS FEEQVLVIRE
101: KLAELYESEQ QWSKAAQMLS GIDLDSTMRV IDDTFRLSKC VQIARLYLED DDAVNAEAFI NKASFLVSNS QHEVLNLQYK VCYARILDLK RKFLEAALRY
201: YDISQIEKRQ IGDELIDEEA LEQALSAAVT CTILAAAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRKPEIDAF AEELKAHQKA LLPDNFTVLD
301: RAMIEHNLLS ASKLYTNISF DELGTLLGIA PQKAEKIASR MIYEDRMRGS IDQVEAVIHF EDDTEELQQW DQQIVGLCQA LNDVLDSMAK KGLSIPV

Best Arabidopsis Sequence Match ( AT5G42970.1 )
(BLAST)

001: MDEALTNASA IGDQRQKIEQ YKLILSSVLS SNDLLQAQRF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIAQFT LTQIQPRVVS FEEQALVIRE
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV

Arabidopsis Description

CSN4At5g42970 [Source:UniProtKB/TrEMBL;Acc:Q1H5B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.