Factsheet for VIT_11s0016g01990.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02230.t01
VIT_12s0035g01450.t01
VIT_12s0055g00390.t01
VIT_13s0084g00660.t01
VIT_18s0001g04470.t01
VIT_18s0001g12250.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64280.1	VIT_18s0001g04470.t01	AT1G22070.1	10659709
AT1G64280.1	VIT_18s0001g04470.t01	AT1G22070.1	10662863
AT1G64280.1	VIT_18s0001g04470.t01	AT1G22070.1	15634206
AT1G64280.1	VIT_01s0026g02230.t01	AT1G26830.1	19490895
AT1G64280.1	VIT_18s0001g04470.t01	AT1G77920.1	10662863
AT1G64280.1	VIT_18s0001g04470.t01	AT1G77920.1	15634206
AT1G64280.1	VIT_12s0055g00390.t01	AT4G14110.1	19490895
AT1G64280.1	VIT_13s0084g00660.t01	AT5G06960.1	10659709
AT1G64280.1	VIT_13s0084g00660.t01	AT5G06960.1	10662863
AT1G64280.1	VIT_13s0084g00660.t01	AT5G06960.1	12383081
AT1G64280.1	VIT_13s0084g00660.t01	AT5G06960.1	15634206
AT1G64280.1	VIT_12s0035g01450.t01	AT5G42970.1	19490895
AT1G64280.1	VIT_18s0001g12250.t01	AT5G42970.1	19490895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g040690.2.1	Tomato	cytosol	70.89	71.88
KRH37416	Soybean	cytosol	65.41	65.64
GSMUA_Achr2P16670_001	Banana	cytosol	64.04	64.04
GSMUA_Achr7P09190_001	Banana	cytosol	62.33	63.3
Zm00001d039469_P001	Maize	cytosol	59.42	59.52
EES00131	Sorghum	cytosol	59.42	59.52
Os01t0194300-01	Rice	cytosol	59.25	59.45
GSMUA_Achr6P00950_001	Banana	nucleus	63.36	58.73
TraesCS3A01G105400.1	Wheat	cytosol	56.51	57.19
TraesCS3D01G107500.1	Wheat	cytosol	56.51	56.9
TraesCS3B01G123800.1	Wheat	cytosol	56.16	56.85
Bra027690.1-P	Field mustard	cytosol, plastid	54.28	55.61
CDY34413	Canola	cytosol	53.94	55.36
CDY25575	Canola	cytosol	53.77	55.09
TraesCS7D01G019000.1	Wheat	cytosol, mitochondrion	45.89	55.03
HORVU3Hr1G019230.6	Barley	cytosol	55.99	54.68
TraesCS4A01G470500.1	Wheat	cytosol	45.55	54.4
AT1G64280.1	Thale cress	cytosol	53.08	52.28
AT4G26120.2	Thale cress	cytosol, plastid	53.25	51.75
Bra013950.1-P	Field mustard	cytosol	51.03	51.47
GSMUA_AchrUn_...	Banana	cytosol	50.17	50.96
CDY50004	Canola	cytosol	51.71	50.67
GSMUA_Achr8P05490_001	Banana	cytosol	49.66	49.91
Bra013952.1-P	Field mustard	cytosol	51.37	49.59
GSMUA_Achr3P25880_001	Banana	cytosol	48.12	49.47
CDX94371	Canola	cytosol	51.03	49.26
CDX89362	Canola	cytosol	50.86	49.09
CDX89364	Canola	cytosol	50.68	48.68
TraesCS7A01G021800.1	Wheat	cytosol, plastid	46.58	48.66
CDX94376	Canola	cytosol	50.34	48.51
VIT_10s0042g01250.t01	Wine grape	cytosol, plastid	44.01	43.78
Bra010439.1-P	Field mustard	cytosol	51.03	30.98
CDY14314	Canola	nucleus	41.95	29.1
VIT_08s0007g05740.t01	Wine grape	cytosol	21.58	25.71
TraesCS7A01G022800.1	Wheat	cytosol	51.54	20.11

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100250996	wikigene:100250996	MapMan:11.8.2.2	MapMan:26.8.3.1.1	Gene3D:3.30.710.10
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:BTB/POZ_dom	ProteinID:CBI27892	ProteinID:CBI27892.3
UniProt:D7TCN4	EMBL:FN595756	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0042742	GO:GO:0050832	GO:GO:0080027	InterPro:IPR000210
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	EntrezGene:LOC100250996	wikigene:LOC100250996	InterPro:NPR1/NIM1-like_C
InterPro:NPR_central_dom	PFAM:PF00651	PFAM:PF11900	PFAM:PF12313	PFAM:PF12796	PFscan:PS50088
PFscan:PS50097	PFscan:PS50297	PANTHER:PTHR24413	PANTHER:PTHR24413:SF124	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225
SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF54695	TIGR:TC60402	UniParc:UPI00015C880E	ArrayExpress:VIT_11s0016g01990
EnsemblPlantsGene:VIT_11s0016g01990	EnsemblPlants:VIT_11s0016g01990.t01	unigene:Vvi.1076	RefSeq:XP_002281475	RefSeq:XP_002281475.1	SEG:seg

Description

No Description!

Coordinates

chr11:+:1612800..1616623

Molecular Weight (calculated)

64940.8 Da

IEP (calculated)

5.741

GRAVY (calculated)

-0.221

Length

584 amino acids

Sequence
(BLAST)

001: MDYRAALSDS NDFSGSSSIC CIAATTESLS SEVSPPDISA LRRLSENLES VFESPEFDFF TDARIVVAGG REVPVHRCIL AARSVFFKAV LAGARKEKEA
101: KFELKDLAKE FDVGYDSLVA VLGYLYSGRV GALPKGVCAC VDDDCPHSAC RPAVDFMVEV LYASFAFQIS ELVGLYQRRL MDILDKVASD DILVILSVAN
201: LCGKACDRLL ARCIDIIIKS DVDVVTLERA LPQEMVKQIV DSRLELGFEE PESTNFPDKH VKRIHRALDS DDVELVRMLL KEGHTTLDDA YALHYAVAFG
301: DAKTTTELLD LGLADVNHKN HRGYTVLHIA AMRKEPKIIV SLLTKGARPT DITPDGRNAL QIAKRLTRAV DYHKSTEEGK PSPKDQLCVE VLEQAERRDP
401: LIGEASFSLA IAGDDLRMKL LYLENRVGLA KLLFPMEAKV AMDIAQVDGT SEFTLTAIRP RNLADAQRTT VDLNEAPFRI KEEHLNRLRA LSKTVDLGKR
501: FFPRCSEVLN KIMDADDLSD LAYLGNGTTE ERLLKKRRYK ELQDQLCKAF NEDKEENDKS RISSSSSSTS LGFGRNNSRL SCKK

Best Arabidopsis Sequence Match ( AT1G64280.1 )
(BLAST)

001: MDTTIDGFAD SYEISSTSFV ATDNTDSSIV YLAAEQVLTG PDVSALQLLS NSFESVFDSP DDFYSDAKLV LSDGREVSFH RCVLSARSSF FKSALAAAKK
101: EKDSNNTAAV KLELKEIAKD YEVGFDSVVT VLAYVYSSRV RPPPKGVSEC ADENCCHVAC RPAVDFMLEV LYLAFIFKIP ELITLYQRHL LDVVDKVVIE
201: DTLVILKLAN ICGKACMKLL DRCKEIIVKS NVDMVSLEKS LPEELVKEII DRRKELGLEV PKVKKHVSNV HKALDSDDIE LVKLLLKEDH TNLDDACALH
301: FAVAYCNVKT ATDLLKLDLA DVNHRNPRGY TVLHVAAMRK EPQLILSLLE KGASASEATL EGRTALMIAK QATMAVECNN IPEQCKHSLK GRLCVEILEQ
401: EDKREQIPRD VPPSFAVAAD ELKMTLLDLE NRVALAQRLF PTEAQAAMEI AEMKGTCEFI VTSLEPDRLT GTKRTSPGVK IAPFRILEEH QSRLKALSKT
501: VELGKRFFPR CSAVLDQIMN CEDLTQLACG EDDTAEKRLQ KKQRYMEIQE TLKKAFSEDN LELGNSSLTD STSSTSKSTG GKRSNRKLSH RRR

Arabidopsis Description

NPR1Regulatory protein NPR1 [Source:UniProtKB/Swiss-Prot;Acc:P93002]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.